View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_42 (Length: 298)
Name: NF18522_low_42
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 54 - 239
Target Start/End: Complemental strand, 33161524 - 33161345
Alignment:
| Q |
54 |
agagtttgcgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcatac |
153 |
Q |
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| T |
33161524 |
agagtttgtgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcata- |
33161426 |
T |
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| Q |
154 |
tcatcctcatcctcttctaattcgtgcatgccagaaagttacgattacaacccaactgaaaataatctggttcgtccaattgggac |
239 |
Q |
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| T |
33161425 |
-----cccatcctcttctaattcgtgcatgccagaaagttacgattacaacccaactgaaaataatgtggttcgtccaattgggac |
33161345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33166543 - 33166486
Alignment:
| Q |
1 |
atgggagatgcatattcaatctatactcaatatacacatgaatgtttcatgttagagtt |
59 |
Q |
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| T |
33166543 |
atgggagatgcatatt-aatctatactcaatatacacatgaatgtttcatgttagagtt |
33166486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 34313183 - 34313286
Alignment:
| Q |
52 |
ttagagtttgcgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcat |
151 |
Q |
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| T |
34313183 |
ttagagtatgcatggcgattgttgaaagatgaacctaaatggtcaaatacatcatttgaagtaggcggtaagagaaccaagatttctgcttcaggagcat |
34313282 |
T |
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| Q |
152 |
actc |
155 |
Q |
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| T |
34313283 |
actc |
34313286 |
T |
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