View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_43 (Length: 295)
Name: NF18522_low_43
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 25599583 - 25599312
Alignment:
| Q |
1 |
aaggataatgttaaaaagagttttagtgatgaggttgttgtggaaaatgagaatgagataataggtggtgcaaatagtagaggaaattgtttgaattgca |
100 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25599583 |
aaggacaatgttcaaaagagttttagtgatgaggttgttgtggaaaatgagaatgggataataggtggtgcaaatagtagaggaaattgtttgaattgca |
25599484 |
T |
|
| Q |
101 |
aagtggctccttcgggtatttttggggtaatgcctctgcatcctattaggacagttcgtagttgatgagtttgttacttgttagatacatgcatttgtta |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25599483 |
aagtggctcctaagggtatttttggggtaatgcctctgcatcctattaggacagttcgtagttgatgagtttgttacttgttagatacatgcatttgtta |
25599384 |
T |
|
| Q |
201 |
agcttttagactcttcaatggctagggattgtagttcttggcaacattgcgtttattttgaaagttttgttt |
272 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
25599383 |
agcttttagactcttcaatggctagggattgtatttcttggcaagattgcgtttattttgaaagttttgttt |
25599312 |
T |
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