View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_44 (Length: 270)
Name: NF18522_low_44
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 30055296 - 30055456
Alignment:
| Q |
100 |
gatgtgttcgacacaggcacaaccacccttcatttgtgcaacgtctgcaagaagtaaa-caatcactttgctctagctagaatcattaaaataataagca |
198 |
Q |
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| T |
30055296 |
gatgtgttcgactcaggcacaaccacccttcatttgtgcaacgtctgcaagaagtaaatcaatcactttgctctagctagaatcattaaaataataagca |
30055395 |
T |
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| Q |
199 |
tttcagagtttgagatattaagaattctattgactttgttttatgtcgaatcctagttctt |
259 |
Q |
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| T |
30055396 |
tttcagagtttgagagattaagaattctattgactttgttttatgtcgaatcctagttctt |
30055456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 30681929 - 30681769
Alignment:
| Q |
100 |
gatgtgttcgacacaggcacaaccacccttcatttgtgcaacgtctgcaagaagtaaa-caatcactttgctctagctagaatcattaaaataataagca |
198 |
Q |
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| T |
30681929 |
gatgtgttcgactcaggcacaaccacccttcatttgtgcaacgtctgcaagcagtaaatcaaccactttgctctagctagaatcattaaaataataagca |
30681830 |
T |
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| Q |
199 |
tttcagagtttgagatattaagaattctattgactttgttttatgtcgaatcctagttctt |
259 |
Q |
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| T |
30681829 |
tttcagagtttgagagatcgagaattctattgactttgttttatgtcgaatcctagttctt |
30681769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 30718126 - 30718024
Alignment:
| Q |
157 |
acaatcactttgctctagctagaatcattaaaataataagcatttcagagtttgagatattaagaattctattgactttgttttatgtcgaatcctagtt |
256 |
Q |
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| T |
30718126 |
acaatcactttgctctagctagaatcattaaaataataagcatttcagagtttgagagatcgagaattctattgactttgttttatgtcgaatcctagtt |
30718027 |
T |
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| Q |
257 |
ctt |
259 |
Q |
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||| |
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| T |
30718026 |
ctt |
30718024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 30682051 - 30681966
Alignment:
| Q |
17 |
cattgtacggatgaaaacatagcttggcaaaacatggaaacaatgagctctatctgaacgttaatgcaaaacaattttacgctgat |
102 |
Q |
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| T |
30682051 |
cattgtagagatgaaaacatagcttggcaaaacatggaaacaatgagctctatctgaacgttaatgcaaaacaattttacgctgat |
30681966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 30055174 - 30055255
Alignment:
| Q |
17 |
cattgtacggatgaaaacatagcttggcaaaacatggaaacaatgagctctatctgaacgttaatgcaaaacaattttacgc |
98 |
Q |
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| T |
30055174 |
cattgtagagatgaaaacgtagcttggcaaaacatgaaaacaatgagctctatctgaacgttaatgcaaaacaatttcacgc |
30055255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 30718303 - 30718222
Alignment:
| Q |
17 |
cattgtacggatgaaaacatagcttggcaaaacatggaaacaatgagctctatctgaacgttaatgcaaaacaattttacgc |
98 |
Q |
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| T |
30718303 |
cattgtagagatgaaaacatagcttggcaaaacatgaaaacagtgagctctatctgaacgttaatgcaaaccaattttacgc |
30718222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 30478648 - 30478704
Alignment:
| Q |
190 |
taataagcatttcagag-tttgagatattaagaattctattgactttgttttatgtc |
245 |
Q |
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| T |
30478648 |
taataagtatttcagagatttgagagattgagaattctattaactttgttttatgtc |
30478704 |
T |
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