View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_47 (Length: 266)
Name: NF18522_low_47
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 15546938 - 15546685
Alignment:
| Q |
1 |
ctcaatgaataactttcaaccaacacataactactaaatttcttccacttatttgctccatcaaactcctcaacttttgttactctcacttgtcttccat |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15546938 |
ctcaaagaataactttcaaccaacacataactactaaatttcttccacttatttgctccatcaaactcctcaacttttgttactctcacttgtctttcat |
15546839 |
T |
|
| Q |
101 |
tcccagccttccatccaaacctttcttgttcccatttcattgcctcaacaacttccaaactcaatccaacacttttctcttcaacactcttaaaccacaa |
200 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15546838 |
tcccagcattccatccaaaccttctttgttcccatttcattgcctcaacaacttccaaactcaatccaacacttttctcttcaacactcttaaaccacaa |
15546739 |
T |
|
| Q |
201 |
aactccatcaaccaatctattttcatcccaaatagcatcctttccttcaacctt |
254 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15546738 |
aactccatcaaccaatctattttcatcccaaacagcatcctttccttcaacctt |
15546685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 15519691 - 15519438
Alignment:
| Q |
1 |
ctcaatgaataactttcaaccaacacataactactaaatttcttccacttatttgctccatcaaactcctcaacttttgttactctcacttgtcttccat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15519691 |
ctcaatgaataactttcaaccaacacataactactaaatttcttccatttgtttgttccatcaaactcttcaacttttgttactctcacttgtcttccat |
15519592 |
T |
|
| Q |
101 |
tcccagccttccatccaaacctttcttgttcccatttcattgcctcaacaacttccaaactcaatccaacacttttctcttcaacactcttaaaccacaa |
200 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15519591 |
tcccagcattccatccaaaccttctttgttcccatttcattgcctcaacaacttccaaactcaatccaacacttttcttttcaacactcttaaaccacaa |
15519492 |
T |
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| Q |
201 |
aactccatcaaccaatctattttcatcccaaatagcatcctttccttcaacctt |
254 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15519491 |
aactccatcaaccaatctattttcatcccaaacagcatcctttccttcaacctt |
15519438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 15551731 - 15551488
Alignment:
| Q |
11 |
aactttcaaccaacacataactactaaatttcttccacttatttgctccatcaaactcctcaacttttgttactctcacttgtcttccattcccagcctt |
110 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| || |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
15551731 |
aactttcaaccaacacataacaactaaatttcttccatttgtttgttccatcaaactcttcaacttttgttactctcacttgtcttccattcccagcatt |
15551632 |
T |
|
| Q |
111 |
ccatccaaacctttcttgttcccatttcattgcctcaacaacttccaaactcaatccaacacttttctcttcaacactcttaaaccacaaaactccatca |
210 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
15551631 |
ccatccaaacctttcttgttcccatttcattccttcaacaacttccaaactcaatccaacacttttctcttcaacactcttaaaccataacactccatca |
15551532 |
T |
|
| Q |
211 |
accaatctattttcatcccaaatagcatcctttccttcaacctt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15551531 |
accaatctattttcatcccaaatagcatcctttctttcaacctt |
15551488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 15523349 - 15523100
Alignment:
| Q |
1 |
ctcaatgaataactttcaaccaacacataactactaaatttcttccacttatttgctccatcaaactcctcaacttttgttactctcacttgtcttccat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||| ||||| || |||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15523349 |
ctcaatgaataagtttcaaccaacacataacaactaaatttattccatttgtttgttccatcaaactcttcaacttttgttactctcacttgtcttccat |
15523250 |
T |
|
| Q |
101 |
tcccagccttccatccaaacctttcttgttcccatttcattgcctcaacaacttccaaactcaatccaacacttttctcttcaacactcttaaaccacaa |
200 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15523249 |
tcccagcattccatccaaaccttctttgttcccatttcattgcctcaccaacttccaacctcaatccaacacttttcttttcaacactcttaaaccacaa |
15523150 |
T |
|
| Q |
201 |
aactccatcaaccaatctattttcatcccaaatagcatcctttccttcaa |
250 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15523149 |
aactccatgaaccaatctattttcatcccaaacagcatcctttccttcaa |
15523100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 4 - 254
Target Start/End: Complemental strand, 15529427 - 15529177
Alignment:
| Q |
4 |
aatgaataactttcaaccaacacataactactaaatttcttccacttatttgctccatcaaactcctcaacttttgttactctcacttgtcttccattcc |
103 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||| || |||| |||| ||||||| |||| ||||||||| | ||||||||||| |||| |
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| T |
15529427 |
aatgaataactttcaaccagcacataacaactaaatttcttccatttgtttgttccaccaaactcttcaaattttgttaccttgacttgtcttcctttcc |
15529328 |
T |
|
| Q |
104 |
cagccttccatccaaacctttcttgttcccatttcattgcctcaacaacttccaaactcaatccaacacttttctcttcaacactcttaaaccacaaaac |
203 |
Q |
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| || ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15529327 |
ctgcattccatccaaacctttcttgttcccatttcattccttcaacaacttccaaactcaatccaacacttttctcttcaacactcttaaaccacaaaac |
15529228 |
T |
|
| Q |
204 |
tccatcaaccaatctattttcatcccaaatagcatcctttccttcaacctt |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
15529227 |
tccatcaaccaatctattttcatcccaaatagcatcctttctttcaacctt |
15529177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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