View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_48 (Length: 265)
Name: NF18522_low_48
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 24 - 262
Target Start/End: Original strand, 21975381 - 21975615
Alignment:
| Q |
24 |
cacatcacacttgggatagtaggagaaggcatgcttacaccataatttagggttgtgacctctcagccattcccatgcagcatgatcaaccttcttgagc |
123 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21975381 |
cacatcacacttgggataataggagaaggcatgcttacaccataattttgggttgtgacctctcagccattcccatgcagcatgatcaaccttcttgagc |
21975480 |
T |
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| Q |
124 |
tcattcatctttgtctcccaagctttattcaggaaaag-aaaata-aaattaaaactcaactaacttatcattattatcattatgaatactaataagaat |
221 |
Q |
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| T |
21975481 |
tcattcatctttgcatcccaagctttattcatgaatagaaaaatacaaattaaaactca------tcatcattatgaatattatgaatactaataataac |
21975574 |
T |
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| Q |
222 |
attatcaagataccttgggaatatgttgcctttgcttctcc |
262 |
Q |
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| T |
21975575 |
ataatcaagataccttggaaatatgttgcctttgctgctcc |
21975615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 44478797 - 44478563
Alignment:
| Q |
24 |
cacatcacacttgggatagtaggagaaggcatgcttacaccataatttagggttgtgacctctcagccattcccatgcagcatgatcaaccttcttgagc |
123 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44478797 |
cacatcacacttgggataataggagaaggcatgcttacaccataattttgggttgtgacctctcagccattcccatgcagcatgatcaaccttcttgagc |
44478698 |
T |
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| Q |
124 |
tcattcatctttgtctcccaagctttattcaggaaaag-aaaata-aaattaaaactcaactaacttatcattattatcattatgaatactaataagaat |
221 |
Q |
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| T |
44478697 |
tcattcatctttgcatcccaagctttattcatgaatagaaaaatacaaattaaaactca------tcatcattatgaatattatgaataccaataataaa |
44478604 |
T |
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| Q |
222 |
attatcaagataccttgggaatatgttgcctttgcttctcc |
262 |
Q |
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| T |
44478603 |
ataatcaagataccttggaaatatgttgcctttgctgctcc |
44478563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 41770940 - 41770989
Alignment:
| Q |
25 |
acatcacacttgggatagtaggagaaggcatgcttacaccataatttagg |
74 |
Q |
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| T |
41770940 |
acatcacacttaggataatatgaaaatgcatgcttacaccataatttagg |
41770989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 47735782 - 47735733
Alignment:
| Q |
25 |
acatcacacttgggatagtaggagaaggcatgcttacaccataatttagg |
74 |
Q |
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||||||||||| ||||| || || || ||||||||||||||||||||||| |
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| T |
47735782 |
acatcacacttaggataatatgaaaatgcatgcttacaccataatttagg |
47735733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 13649412 - 13649461
Alignment:
| Q |
25 |
acatcacacttgggatagtaggagaaggcatgcttacaccataatttagg |
74 |
Q |
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||||||||||| ||||| || || || ||||||||||||||||||||||| |
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| T |
13649412 |
acatcacacttaggataatatgaaaatgcatgcttacaccataatttagg |
13649461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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