View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_5 (Length: 521)
Name: NF18522_low_5
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 10 - 467
Target Start/End: Original strand, 38627583 - 38628040
Alignment:
| Q |
10 |
attatactgacctaaattttgtctatggtaatatgagctgagattcccttgttttttcttggttgcttccaatatagaaattgttgctagctgtagcaca |
109 |
Q |
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| T |
38627583 |
attatactgacctaaattttgtctatggtaatatgagttgagattcccttgttttttcttggttgcttccaatatagaaattgttgctagctgtagcaca |
38627682 |
T |
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| Q |
110 |
ttacatttgaccttttgaaacattttaaggtcttgtatgagtcactttagtgaacagtaatcaaatatttgtgcatcaattgcggcttaataattctttc |
209 |
Q |
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| T |
38627683 |
ttacatttgaccttttgaaacattttaaggtcttgtatgagtcactttagtgaacagtaataaaatatttgtgcatcaattgcggcttaataattctttc |
38627782 |
T |
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| Q |
210 |
acatatagatgcaagccaattagtacttcaccgttttcttttcttgaacgtgaacgtgagtggatagtgcttaaattccagtacttttacaacgacttca |
309 |
Q |
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| T |
38627783 |
acatatagatgcaagccaattagtacttcaccgttttcttttcttgaacgtgaacgtgagtggatagtgcttaaattccagtacttttacaacgacttca |
38627882 |
T |
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| Q |
310 |
agcatcacaaataattttttcaaaaagaatgtagtacttcaattcaattcaacaatatatgttcatcacatgaaaaacgtgtcctgtcatgtgatccttt |
409 |
Q |
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| T |
38627883 |
agcatcacaaataattttttcaaaaagaatatagtacttcaattcaattcaacaatatatgttcatcacatgaaaaacgtgtcctgtcatgtgatccttt |
38627982 |
T |
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| Q |
410 |
cctcgaagctatattatgctaacataacaagcaacctagttataagtgttgtcaacac |
467 |
Q |
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| T |
38627983 |
cctcgaagctatattatgctaacataacaagcaacctagttataagtgttgtcaacac |
38628040 |
T |
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