View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18522_low_50 (Length: 262)

Name: NF18522_low_50
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18522_low_50
NF18522_low_50
[»] chr3 (3 HSPs)
chr3 (19-256)||(52720361-52720598)
chr3 (19-255)||(52711472-52711719)
chr3 (122-254)||(52697813-52697945)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 52720598 - 52720361
Alignment:
Q  19 ctcgttcactgaaagatcatcaaaaagtgccaagttaatacctatcatatattaaaattatgtgtacataatacattgtgatgattctgtataatttcat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  52720598 ctcgttcactgaaagatcatcaaaaagtgccaagttaatacctatcatatattaaaattatgtgtacataatacattgtgatgattctgtataatgtaat 52720499  T
Q  119 aatgtagtgtttagttcatacttatgatgaagggagctgccttccatcctccagttgttcttttatcagcaatcctaccatgccgatccacgcggccatt 218  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52720498 aatgtagtatttagttcatacttatgatgaagggagctgccttccatcctccagttgttcttttatcagcaatcctaccatgccgatccacgcggccatt 52720399  T
Q  219 gcttaccaagctactcgattccatttcctcctgttttt 256  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52720398 gcttaccaagctactcgattccatttcctcctgttttt 52720361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 52711719 - 52711472
Alignment:
Q  19 ctcgttcactgaaagatcatcaaaaagtgccaagtta------atacctatcatatattaaaattat-----gtgtacataatacattgtgatgattctg 107  Q
    ||||||||||||||||||||||||||| |||||||||      |||| || | |||||||||| |||     ||||||||||||||||||||||||||||    
T  52711719 ctcgttcactgaaagatcatcaaaaagggccaagttattgctaatacataccgtatattaaaactatactatgtgtacataatacattgtgatgattctg 52711620  T
Q  108 tataatttcataatgtagtgtttagttcatacttatgatgaagggagctgccttccatcctccagttgttcttttatcagcaatcctaccatgccgatcc 207  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  52711619 tataatttaataatgtagtatttagttcatacttatgatgaagggagctgccttccatcctccggttgttcttttattagcaatcctaccttgccgatcc 52711520  T
Q  208 acgcggccattgcttaccaagctactcgattccatttcctcctgtttt 255  Q
    || |||||||||||||||||||||||||||||||||||||||||||||    
T  52711519 acacggccattgcttaccaagctactcgattccatttcctcctgtttt 52711472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 254
Target Start/End: Complemental strand, 52697945 - 52697813
Alignment:
Q  122 gtagtgtttagttcatacttatgatgaagggagctgccttccatcctccagttgttcttttatcagcaatcctaccatgccgatccacgcggccattgct 221  Q
    ||||| |||| ||||||| ||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||  |||| ||    
T  52697945 gtagtatttatttcatacatatgatatagggagctgccttccatcctccagttgttcgtttatcagcaatcctaccatgcctatccacacgatcattact 52697846  T
Q  222 taccaagctactcgattccatttcctcctgttt 254  Q
     ||||||||| || | |||||||||||||||||    
T  52697845 caccaagctattcaaatccatttcctcctgttt 52697813  T

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