View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_51 (Length: 261)
Name: NF18522_low_51
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_51 |
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| [»] scaffold0655 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 2 - 245
Target Start/End: Complemental strand, 26472031 - 26471788
Alignment:
| Q |
2 |
ctctagttaagcatatttacaaataagtaaatctacaaatttcaatcacggtttcataaatgaaacatcgtttatcaagcacttaatcataattggtatt |
101 |
Q |
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| T |
26472031 |
ctctagttaagcatatttacaaataagtaaatctacgaat--caatcacggtttcataattgacatgtcgtttatcaagcgcttaatcataattagtatt |
26471934 |
T |
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| Q |
102 |
aaatattgcattaatctaacaaagaaggtag--gggattcgaagaatcataatcattgtctaacctctgaaacaaacattttacttttttgcaaacaact |
199 |
Q |
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| T |
26471933 |
aaatattacattaatccaataaagaagatagaggggattcgaagaatcctaatcatcgtctaacctctgaaacaaaccttttacttttttgcaaacaact |
26471834 |
T |
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| Q |
200 |
attactcgcattgacaaatcaaaagttcaaacccttaaaccccttt |
245 |
Q |
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| T |
26471833 |
attactcgcattgacaaatcaaaagttcaaacccttaaaccccttt |
26471788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 23294232 - 23294414
Alignment:
| Q |
18 |
ttacaaataagtaaatctacaaatttcaatcacggtttcataaatgaaacatcgtttatcaagcacttaatcataattggtattaaatattgcattaatc |
117 |
Q |
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| T |
23294232 |
ttacaaataagtaaatcaacagaat--aatcacggtttcataatcaacacatcgtttatcaagaatttaatcataattagtattaaatattgcattactc |
23294329 |
T |
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| Q |
118 |
taacaaagaag--gtaggggattcgaagaatcataatcattgtctaacctctgaaacaaacattttacttttttgcaaacaacta |
200 |
Q |
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| T |
23294330 |
cgacaaagaagacaaagataatttgaagaatcctaatcaccgtctaacctatgaaacaaactctttacttttctgcaaataacta |
23294414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 175
Target Start/End: Original strand, 8839431 - 8839543
Alignment:
| Q |
66 |
acatcgtttatcaagcactt-aatcataattggtattaaatattgcattaatctaacaaagaag--gtaggggattcgaagaatcataatcattgtctaa |
162 |
Q |
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| T |
8839431 |
acatcgtttataaagcgctttaataataattgctattgacttttgcattaatctgacaaagaagtcggagggtatttgaagaatcgtaattgtcgtctaa |
8839530 |
T |
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| Q |
163 |
cctctgaaacaaa |
175 |
Q |
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| T |
8839531 |
cctctaaaacaaa |
8839543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 38986542 - 38986455
Alignment:
| Q |
90 |
ataattggtattaaatattgcattaatctaacaaagaaggtag--gggattcgaagaatcataatcattgtctaacctctgaaacaaa |
175 |
Q |
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| T |
38986542 |
ataattggtattgaatattgagttaatctgacaaagaagatagaagagattcgaagaatcattatcacagtcaaaactctgaaacaaa |
38986455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 39017639 - 39017552
Alignment:
| Q |
90 |
ataattggtattaaatattgcattaatctaacaaagaaggtag--gggattcgaagaatcataatcattgtctaacctctgaaacaaa |
175 |
Q |
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| T |
39017639 |
ataattggtattgaatattgagttaatctgacaaagaagatagaagagattcgaagaatcattatcacagtcaaaactctgaaacaaa |
39017552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 206
Target Start/End: Original strand, 1254 - 1395
Alignment:
| Q |
66 |
acatcgtttatcaagcacttaatcataattggtattaaatattgcattaatctaacaaagaag--gtaggggattcgaagaatcataatcattgtctaac |
163 |
Q |
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| T |
1254 |
acatcatttatcaagcattcaatcctaattggtattgtatattgcataagtccgacaaagaagacataggggattcacaaattccttatcatcgtctaac |
1353 |
T |
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| Q |
164 |
ctctgaaacaaacattttacttttttgcaaacaactattactc |
206 |
Q |
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| T |
1354 |
ctcggaaacaaac-ctttacttttctgcaaataactagtactc |
1395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 6975415 - 6975348
Alignment:
| Q |
49 |
acggtttcataaatgaaacatcgtttatcaagcacttaatcataattggtattaaatattgcattaat |
116 |
Q |
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| T |
6975415 |
acggtttcataatcaaaccatcgtttattaagtacttagtcataattggtattgaatattggattaat |
6975348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 19585120 - 19585244
Alignment:
| Q |
71 |
gtttatcaagcacttaatcataattggtattaaatattgcattaatctaacaaag--aaggtaggggattcgaagaatcataatcattgtctaacctctg |
168 |
Q |
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| T |
19585120 |
gtttatcaagcactttaccatatttggtattgaatattgcattaacccttcaaagaaaatatatgggattcaaataatcataatcgctatctaacctctt |
19585219 |
T |
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| Q |
169 |
aaacaa-acattttacttttttgca |
192 |
Q |
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| T |
19585220 |
aaacaactctttttacttttttgca |
19585244 |
T |
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