View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_54 (Length: 250)
Name: NF18522_low_54
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 33166763 - 33166528
Alignment:
| Q |
14 |
ttctaaggatgcagttgtacgggggtaaatcaaagagcaaatgttttttggcaaaagaattgcagatggttataatgaacattgtggtcatttctttgca |
113 |
Q |
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| T |
33166763 |
ttctaaggatgcagttgtacaggggtaaatcaaagagcaaatgttttttggcaaaagaattgcagatggttataatgaacattgtggttatttccttgca |
33166664 |
T |
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| Q |
114 |
aagggcccagtacaactaaaatctcgatggtcgaaggtgaattccataattaaaaaatttggagggtgctacaagcaagcctatccaagaagnnnnnnng |
213 |
Q |
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| T |
33166663 |
aagggaccagtacaactaaaatctcgatggtcgaaggtgaattccataattaaaaaatttggagggtgctacaagcaagcctatccaagaagaaaaaaag |
33166564 |
T |
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| Q |
214 |
tggtagcttatagtgatgtcatgggagatgcatatt |
249 |
Q |
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| T |
33166563 |
tggtagcttagagtgatgtcatgggagatgcatatt |
33166528 |
T |
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