View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18522_low_55 (Length: 250)

Name: NF18522_low_55

Description: NF18522

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18522_low_55

[»] chr6 (2 HSPs)

Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 2)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 134; E-Value: 7e-70

Query Start/End: Original strand, 64 - 239

Target Start/End: Complemental strand, 34847566 - 34847390

Alignment:

Q	64	aagcataagaaatactagatcacaaggatatattgataccttatcttatttgtaagtacttgtgtatggactatactaatacacaccacattgaattcac	163	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34847566	aagcataagaaatactagatcacaaggatatattgataccttatcttatttgtaagtacttgtgtatggactatactaatacacaccacattgaattcac	34847467	T

Q	164	ctgattttcctctttcc-nnnnnnnnncaataaaatcataattctatcacacacaaaattaccaattaagagatatt	239	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34847466	ctgattttcctctttccttctttttgtcaataaaatcataattctatcgcacaaaaaattaccaattaagagatatt	34847390	T

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Target: chr6; HSP #2

Raw Score: 40; E-Value: 0.00000000000009

Query Start/End: Original strand, 1 - 40

Target Start/End: Complemental strand, 34847629 - 34847590

Alignment:

Q	1	tggacatagtttattcaatgtggatactttttataattga	40	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34847629	tggacatagtttattcaatgtggatactttttataattga	34847590	T

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