View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_59 (Length: 244)
Name: NF18522_low_59
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 31 - 228
Target Start/End: Complemental strand, 12703562 - 12703370
Alignment:
| Q |
31 |
ggaagttggtaaagagagaagattatgagaatgaacaacttgaaaggagtggtattactgaggaacttgaccaacctgtctcttctcctcaagagcctta |
130 |
Q |
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| T |
12703562 |
ggaagttgctaatgggtgaagattatgagaatgaacaacttgaaaggagtggtattactgaggaacttgaacaacctgtctcttcacctcaagagcctta |
12703463 |
T |
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| Q |
131 |
ttcctctgacagtactcaaagcagcaagaggaagaggtgcaccttgttacctaatcaagatcatggtgggaatagatcgcttagaaacttgttaactg |
228 |
Q |
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| T |
12703462 |
ttcctctgacagtactcaaagcagcaagagaaagaggtgcaccttgttacctaatcaagatcatggtg-----agaaagcttagaaacttgttaactg |
12703370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 198
Target Start/End: Complemental strand, 8207427 - 8207280
Alignment:
| Q |
51 |
gattatgagaatgaacaacttgaaaggagtggtattactgaggaacttgaccaacctgtctcttctcctcaagagccttattcctctgacagtactcaaa |
150 |
Q |
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|||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||||| ||||||||||||||| || || || || ||| |||||| |
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| T |
8207427 |
gattatgagaatgaacaactcgaaaggagtggtataaccgaggaacttgaacaacctgtctgttctcctcaagagccctactcttcggatagttctcaaa |
8207328 |
T |
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| Q |
151 |
gcagcaagaggaagaggtgcaccttgttacctaatcaagatcatggtg |
198 |
Q |
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| T |
8207327 |
gcagtaagaggaaacggggcaccgagtttcctagccaagatcatggtg |
8207280 |
T |
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