View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_66 (Length: 230)
Name: NF18522_low_66
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 52548997 - 52549114
Alignment:
| Q |
19 |
actaggccaaaacaatgatacactaaagtcagagtttacaaggcatgaaatgaatacataaaccacaacttcaatgatatatccatccttaccatatagt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
52548997 |
actaggccaaaacaatgatacactaaagtcagagtttacaaggcatgaaatgaatacataaaccacaacttcaatgattt----atccttaccatatagt |
52549092 |
T |
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| Q |
119 |
agttaacaaatgtgccaccatt |
140 |
Q |
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||||||| |||||||||||||| |
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| T |
52549093 |
agttaacgaatgtgccaccatt |
52549114 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 17126528 - 17126450
Alignment:
| Q |
108 |
taccatatagtagttaacaaatgtgccaccattttgtacaaatcttgcaacagagaatgccacatcttctgctggtcta |
186 |
Q |
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| T |
17126528 |
taccatatagtagttaacatatgagccgcgattctgtacgaatctggcaaccgagaatgccaagtcttctgctggtcta |
17126450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 5230945 - 5230867
Alignment:
| Q |
108 |
taccatatagtagttaacaaatgtgccaccattttgtacaaatcttgcaacagagaatgccacatcttctgctggtcta |
186 |
Q |
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||||||||||||||||||||| | ||||| |||||||| ||||| ||||| ||| |||||| ||||| | ||||||| |
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| T |
5230945 |
taccatatagtagttaacaaaggagccacgattttgtatgaatctagcaactgagtatgccaagtcttcagttggtcta |
5230867 |
T |
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