View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_8 (Length: 440)
Name: NF18522_low_8
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 6e-81; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 33294625 - 33294436
Alignment:
| Q |
21 |
taatgtgagacccgtgtcatagagagaaagagaaaaatattttttaatacaagcatatggataagataatttatatgatataaactataaacggttattt |
120 |
Q |
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| T |
33294625 |
taatgcgagacctgtgtcatacagagaaagagaaaaatattttttaatacaagcatatggataagataatttatatgatgtaaactataaacggttattt |
33294526 |
T |
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| Q |
121 |
aaatttaaaaaatatgtattgagtattacannnnnnngttttgacaaaatgtatagagtattacatgttaagttgtgtaattttactttt |
210 |
Q |
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| T |
33294525 |
aaatttaaaaaatatgtattgagtattacatttttttgttttgacaaaatgtatagagtattacatgttaagttgtgtaattttactttt |
33294436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 33294414 - 33294330
Alignment:
| Q |
239 |
aagaaactaatatggagtgacatagtaatatagtgctagcagaaccatgaagaaaagattaccatcaagggcttcatctttattc |
323 |
Q |
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| T |
33294414 |
aagaaactaatatagagtgacatattaatatagtgctagcagaaccatgaagaaaagattaccatcaagggcttcatctttattc |
33294330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 33294256 - 33294216
Alignment:
| Q |
392 |
aggataaaattgaaaccgtgtgttgatccatttttcatctc |
432 |
Q |
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| T |
33294256 |
aggataaaattgaaaccgtgtgttgatccatttttcatctc |
33294216 |
T |
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