View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18523_high_2 (Length: 556)
Name: NF18523_high_2
Description: NF18523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18523_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Complemental strand, 2095038 - 2094505
Alignment:
| Q |
1 |
ttgagcttttttaaataaagtgagagtaattttgaaaactgtatacataaacttatatttaaccataaatattacctttttgatgaaaaaagagagctat |
100 |
Q |
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| T |
2095038 |
ttgagcttttttaaataaagtgagagtaattttgaaaactgtttacataaacttatatttaaccataaatattacctttttgatgaaaaaagagagctat |
2094939 |
T |
|
| Q |
101 |
aaacttaaaattgagcatgcacgaactaaattcaggaatagtgcacattttttaagcttttgaagaagttgcacttgttgagtc-nnnnnnnttaattgc |
199 |
Q |
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| T |
2094938 |
aaacttaaaattgagcatgcactaactaaattcaggaatagtgcacattttttaagcttttgaagaagttgcacttgttgagtcaaaaaaaattaattgc |
2094839 |
T |
|
| Q |
200 |
tcttattttttctatggacagacataagtccctctcttattcttttcgtcatcttgtttgatctactttgattttgatttcaattatctgtttgtccgta |
299 |
Q |
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|||| |||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2094838 |
tcttgttttttttatggacagacataagcccctttcttattcttttcgtcatcttgtttgatctac------tttgatttcaattatctgtttgtccgta |
2094745 |
T |
|
| Q |
300 |
gtatgcgatcaaaggtgtttgaacggtcaggacctatgttggaccatccaactattagagatgatctatatccattttttgacccataatttcattcata |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2094744 |
gtatgcgatcaaaggtgtttgaacggtcaggacctatgttggaccatccagctattagagaggatctatatccattttttgacccataatttcattcata |
2094645 |
T |
|
| Q |
400 |
caaagacaaaaatgatacactgcatcatagcatgatcatgtgatctcacaaaatgggatgcgcnnnnnnnnagattaacaatgtgctttcatccttttaa |
499 |
Q |
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|||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2094644 |
caaagacaaaaatgatacaccgcgtcatagcatgattttgtgatctcacaaaatgggatgcgattttttttagattaacaatgtgctttcatccttttaa |
2094545 |
T |
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| Q |
500 |
tttgttgttgagttcatgcatgtgactagttcgtttgatt |
539 |
Q |
| |
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| T |
2094544 |
tttgttgttgagttcatgcatgtgactagttcgtttgatt |
2094505 |
T |
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