View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18523_high_3 (Length: 521)
Name: NF18523_high_3
Description: NF18523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18523_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 20 - 510
Target Start/End: Original strand, 15841360 - 15841850
Alignment:
| Q |
20 |
tgtttatccttcttttgttaagaagtcgtaaaatgaacagtctttgacttactgaattaggtattaacatgtattcatcaagttttaatatcaaatttta |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15841360 |
tgtttatccttcttttgttaagaagtcgtaaaatgaacagtctttgacttactgaattaggtattaacatgtattcatcaagttttaatatcaaatttta |
15841459 |
T |
|
| Q |
120 |
aacaaccgaactgaaaatatcaagtaatagtagttaggagtactcactgtggtgtatttggcttgcttgctgctctcactagttgctgaaacatcttcct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15841460 |
aacaaccgaactgaaaatatcaagtaatagtagttaggagtactcactgtggtgtatttggcttgcttgctgctctcactagttgctgaaacatcttcct |
15841559 |
T |
|
| Q |
220 |
ttcatttattgggtccatgcctgatnnnnnnnntagtcaaagaagatcatttgagtgctgagtgccattaatccagaaagaatttacttcaacgaataac |
319 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15841560 |
ttcatttattgggtccatgcctgataaaaaaaatagtcaaagaagatcatttgagtgctgagtgccattaatccagaaagaatttacttcaacgaataac |
15841659 |
T |
|
| Q |
320 |
caaccttggttaatctcatcaacaactcgaaatgggcagtttgtaagatcttgaagggaaacaagataaacaattgttgaaactgatcgctcctggaaaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15841660 |
caaccttggttaatctcatcaacaactcgaaatgggcagtttgtaagatcttgaagggaaacaagataaacaattgttgaaactgatcgctcctggaaaa |
15841759 |
T |
|
| Q |
420 |
ccaaaattaaaggctaattagtgaacggagcgccaggggagcacaaaagcactaaaaagataatctttagtacccctccagattgatgatg |
510 |
Q |
| |
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| T |
15841760 |
ccaaaattaaaggctaattagtgaacggagcgccaggggagcacaaaagcactaaaaagataatctttagtacccctccagattgatgatg |
15841850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 20 - 510
Target Start/End: Original strand, 15827124 - 15827610
Alignment:
| Q |
20 |
tgtttatccttcttttgttaagaagtcgtaaaatgaacagtctttgacttactgaattaggtattaacatgtattcatcaagttttaatatcaaatttta |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15827124 |
tgtttatccttctgttgttaagaagtcgtaaaatgaacagtctttgacttactgaattaggtattaacatgtattcatcaagttttaatatcaaatttta |
15827223 |
T |
|
| Q |
120 |
aacaaccgaactgaaaatatcaagtaatagtagttaggagtactcactgtggtgtatttggcttgcttgctgctctcactagttgctgaaacatcttcct |
219 |
Q |
| |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15827224 |
atcgaccgaactgaaaatatcaagtaatagtagttaggagtactcactgtggtgtacttggcttgcttgctgctctcactagttgctgaaacatcttcct |
15827323 |
T |
|
| Q |
220 |
ttcatttattgggtccatgcctgatnnnnnnnntagtcaaagaagatcatttgagtgctgagtgccattaatccagaaagaatttacttcaacgaataac |
319 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||||| |
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| T |
15827324 |
ttcatttattgggtccatccctgataaaaa----agtcaaagaagatcatttgagtgttgagttccgttaatccagaaagaatttacttcaacaaataac |
15827419 |
T |
|
| Q |
320 |
caaccttggttaatctcatcaacaactcgaaatgggcagtttgtaagatcttgaagggaaacaagataaacaattgttgaaactgatcgctcctggaaaa |
419 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15827420 |
caaccttggttgatttcatcaacaactcgaaatgggcagtttgtaagatcttgaagggaaacaagataaacaattgttgaaactgatcgctcctggaaaa |
15827519 |
T |
|
| Q |
420 |
ccaaaattaaaggctaattagtgaacggagcgccaggggagcacaaaagcactaaaaagataatctttagtacccctccagattgatgatg |
510 |
Q |
| |
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|| |||||||||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15827520 |
ccgaaattaaaggttaattggtgaacggagaacaaggggagcacaaaagcactaaaaagataatctttagtacccctccagattgatgatg |
15827610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 59 - 443
Target Start/End: Original strand, 15821717 - 15822095
Alignment:
| Q |
59 |
gtctttgacttactgaattaggtattaacatgtattcatcaagttttaatatcaaattttaaacaaccgaactgaaaatatcaagtaatagtagttagga |
158 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| | |
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|
| T |
15821717 |
gtcttttactgactgaattaggtattaacatgcatttatcaagttttaatatcaaattttaaacaaaggaaccaaaaagatcaagtaatagtagttagta |
15821816 |
T |
|
| Q |
159 |
gtactcactgtggtgtatttggcttgcttgctgctctcactagttgctgaaacatcttcctttcatttattgggtccatgcctgatnnnnnnnntagtca |
258 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| |
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|
| T |
15821817 |
gtactcgctgtggcgtatttggcttgcttgctgctctcactagttgctgaaacatcttcctctcatttattgggtccatccctgatgaaaatag-agtca |
15821915 |
T |
|
| Q |
259 |
aagaagatcatttgagtgctgagtgccattaatccagaaagaatttacttcaacgaataaccaaccttggttaatctcatcaacaactcgaaatgggcag |
358 |
Q |
| |
|
|||||||||| ||| |||| ||| ||||||| ||||| ||||||||||| ||||||||||||||| || |||||||| |||| || |||||||||| |
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|
| T |
15821916 |
---aagatcatttcagttctga--gccgttaatcctgaaaggatttacttcaaagaataaccaaccttgattgatctcatccacaaatcaaaatgggcag |
15822010 |
T |
|
| Q |
359 |
tttgtaagatcttgaagggaaacaagataaacaattgttgaaactgatcgctcctggaaaaccaaaattaaaggctaattagtga |
443 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||| |
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| T |
15822011 |
tttgtaggatcttgaagggaaacaagataaacaatagttgaaactgatcgctcctggataaccaaaattagaggttaattagtga |
15822095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 56 - 440
Target Start/End: Complemental strand, 47448293 - 47447918
Alignment:
| Q |
56 |
acagtctttgacttactgaattaggtat-taacatgtattcatcaagttttaatatcaaattttaaacaaccgaactgaaaatatcaagtaatagtagtt |
154 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||| | |||||||| | ||| |||||| |||||| || || |
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|
| T |
47448293 |
acagtctttgactcgctgaattaggtatgtaacatgtattcatcaaattttattattat-ttttaaacgaaggaattgaaaa------gtaatattaatt |
47448201 |
T |
|
| Q |
155 |
aggagtactcactgtggtgtatttggcttgcttgctgctctcactagttgctgaaacatcttcctttcatttattgggtccatgcctgatnnnnnnnnta |
254 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |
|
|
| T |
47448200 |
ag---tactcactgtggtgtatttggcttgcttgctgctctcactagttgctgaaacatcttcctttcatttattggatccattcctgataaaaaaagga |
47448104 |
T |
|
| Q |
255 |
gtcaaagaagatcatttgagtgctgagtgccattaatccagaaagaatttacttcaacgaataaccaaccttggttaatctcatcaacaactcgaaatgg |
354 |
Q |
| |
|
|||| |||| || || ||||| | | | || | ||| |||||||||||| || || ||||||||||||||| |||||||||||||||| |||||| |
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|
| T |
47448103 |
atcaatgaaggtctcttaagtgcagtctacggttgaaccaaaaagaatttactctaaagactaaccaaccttggttgatctcatcaacaactctaaatgg |
47448004 |
T |
|
| Q |
355 |
gcagtttgtaagatcttgaagggaaacaagataaacaattgttgaaactgatcgctcctggaaaaccaaaattaaaggctaattag |
440 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
47448003 |
gcagtttgtaagatcttgaagagaaacaagataaacaatagttgaaactgatcgctcctggaaaaccaaatttaaaggttaattag |
47447918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 161 - 440
Target Start/End: Complemental strand, 10706447 - 10706171
Alignment:
| Q |
161 |
actcactgtggtgtatttggcttgcttgctgctctcactagttgctgaaacatcttcctttcatttattgggtccatgcctgatnnnnnnnntagtcaaa |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| |
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|
| T |
10706447 |
actcactgtggtgtatttggcttgcttgctgctctcactagttgctgaaacatcttcctttcatttattggatccattcctgatacaaagt---gtcaat |
10706351 |
T |
|
| Q |
261 |
gaagatcatttgagtgctgagtgccattaatccagaaagaatttacttcaacgaataaccaaccttggttaatctcatcaacaactcgaaatgggcagtt |
360 |
Q |
| |
|
||||||| ||||||||| ||| |||| |||||||||||||| | || || |||||||||||| || |||||||||||||||| |||||||||||| |
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|
| T |
10706350 |
gaagatctcttgagtgctctctgcggttaaaccagaaagaatttattctaaagactaaccaaccttgattgatctcatcaacaactctaaatgggcagtt |
10706251 |
T |
|
| Q |
361 |
tgtaagatcttgaagggaaacaagataaacaattgttgaaactgatcgctcctggaaaaccaaaattaaaggctaattag |
440 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| ||||||| |
|
|
| T |
10706250 |
tgtaagatcttgaagtgaaacaagataaacaatagttgaaactgatcgttcctggaaaaccaaatttaaaggttaattag |
10706171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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