View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18523_low_10 (Length: 258)

Name: NF18523_low_10
Description: NF18523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18523_low_10
NF18523_low_10
[»] chr8 (21 HSPs)
chr8 (1-60)||(4183980-4184039)
chr8 (1-59)||(10717121-10717179)
chr8 (1-59)||(10718449-10718507)
chr8 (1-58)||(28996835-28996892)
chr8 (1-59)||(22534723-22534781)
chr8 (1-59)||(36588222-36588280)
chr8 (1-59)||(36589388-36589446)
chr8 (7-60)||(28998000-28998053)
chr8 (2-59)||(45517962-45518019)
chr8 (1-59)||(22272271-22272329)
chr8 (1-59)||(22533317-22533375)
chr8 (1-59)||(30124224-30124282)
chr8 (1-58)||(4182623-4182680)
chr8 (8-56)||(41846650-41846698)
chr8 (7-59)||(41847187-41847239)
chr8 (7-57)||(3483635-3483685)
chr8 (1-59)||(38456731-38456789)
chr8 (1-59)||(38658481-38658539)
chr8 (7-60)||(14712784-14712837)
chr8 (7-59)||(1420449-1420501)
chr8 (7-59)||(14197825-14197877)
[»] scaffold0230 (1 HSPs)
scaffold0230 (1-59)||(432-490)
[»] scaffold0106 (2 HSPs)
scaffold0106 (1-59)||(30908-30966)
scaffold0106 (1-59)||(29729-29787)
[»] chr7 (20 HSPs)
chr7 (1-59)||(17066425-17066483)
chr7 (1-59)||(32197910-32197968)
chr7 (1-59)||(12933419-12933477)
chr7 (1-59)||(31848145-31848203)
chr7 (7-56)||(38742184-38742233)
chr7 (1-56)||(32544775-32544830)
chr7 (1-59)||(24195607-24195665)
chr7 (5-58)||(31489940-31489993)
chr7 (7-59)||(5611514-5611566)
chr7 (1-56)||(11217072-11217127)
chr7 (1-56)||(12385708-12385763)
chr7 (7-58)||(31853549-31853600)
chr7 (1-56)||(32543483-32543538)
chr7 (9-59)||(24197112-24197162)
chr7 (1-59)||(35212068-35212126)
chr7 (9-59)||(39619800-39619850)
chr7 (1-59)||(41694956-41695014)
chr7 (1-59)||(42254958-42255016)
chr7 (7-60)||(36748197-36748249)
chr7 (7-59)||(554245-554297)
[»] chr6 (17 HSPs)
chr6 (1-59)||(18810532-18810590)
chr6 (64-172)||(14120640-14120747)
chr6 (1-60)||(20897498-20897557)
chr6 (1-60)||(21165245-21165304)
chr6 (1-59)||(34998142-34998200)
chr6 (7-60)||(17000284-17000337)
chr6 (7-56)||(20391217-20391266)
chr6 (7-57)||(17516164-17516214)
chr6 (1-59)||(21953206-21953264)
chr6 (7-59)||(29291359-29291411)
chr6 (1-59)||(16995451-16995509)
chr6 (1-59)||(17517310-17517368)
chr6 (8-57)||(30253547-30253596)
chr6 (29-58)||(34989962-34989991)
chr6 (12-60)||(1972399-1972447)
chr6 (62-90)||(10805373-10805401)
chr6 (29-65)||(19296377-19296413)
[»] chr2 (10 HSPs)
chr2 (1-59)||(25977870-25977928)
chr2 (1-60)||(1778791-1778850)
chr2 (1-59)||(11087049-11087107)
chr2 (1-60)||(2411261-2411320)
chr2 (1-59)||(1777469-1777527)
chr2 (1-59)||(2412429-2412487)
chr2 (1-59)||(25979252-25979310)
chr2 (1-59)||(30843644-30843702)
chr2 (1-59)||(23861752-23861810)
chr2 (29-69)||(43788848-43788888)
[»] chr1 (21 HSPs)
chr1 (1-59)||(9774889-9774947)
chr1 (1-59)||(34934748-34934806)
chr1 (1-60)||(37396841-37396900)
chr1 (1-59)||(27264217-27264275)
chr1 (1-59)||(35911889-35911947)
chr1 (1-59)||(47038866-47038924)
chr1 (1-59)||(50164403-50164461)
chr1 (1-60)||(20722471-20722530)
chr1 (1-60)||(30722115-30722174)
chr1 (1-60)||(46075051-46075110)
chr1 (1-59)||(17977560-17977618)
chr1 (1-59)||(27262908-27262966)
chr1 (1-59)||(39163025-39163083)
chr1 (1-66)||(23469970-23470035)
chr1 (11-59)||(2604138-2604186)
chr1 (7-59)||(24609919-24609971)
chr1 (7-59)||(48588968-48589020)
chr1 (104-178)||(31475162-31475236)
chr1 (1-59)||(35721101-35721159)
chr1 (1-59)||(37395633-37395691)
chr1 (1-60)||(39162822-39162882)
[»] chr3 (31 HSPs)
chr3 (1-74)||(22508720-22508793)
chr3 (1-70)||(43641132-43641201)
chr3 (8-60)||(52708625-52708677)
chr3 (1-59)||(39820605-39820663)
chr3 (1-59)||(52403125-52403183)
chr3 (1-60)||(977847-977906)
chr3 (8-59)||(42446526-42446577)
chr3 (1-59)||(42447788-42447846)
chr3 (1-59)||(45268571-45268629)
chr3 (1-59)||(52401017-52401075)
chr3 (1-59)||(53121302-53121360)
chr3 (1-59)||(53122472-53122530)
chr3 (1-57)||(20488368-20488424)
chr3 (1-57)||(39819314-39819370)
chr3 (7-59)||(40477381-40477433)
chr3 (7-59)||(46026076-46026128)
chr3 (1-60)||(4705680-4705739)
chr3 (1-60)||(48033057-48033116)
chr3 (9-55)||(11914842-11914888)
chr3 (8-58)||(40476222-40476272)
chr3 (1-59)||(46027418-46027476)
chr3 (1-59)||(46104343-46104401)
chr3 (1-59)||(47433810-47433868)
chr3 (1-58)||(20489359-20489416)
chr3 (9-58)||(32637197-32637246)
chr3 (1-58)||(45267306-45267363)
chr3 (29-69)||(13584337-13584377)
chr3 (7-59)||(20585651-20585703)
chr3 (11-59)||(20802848-20802896)
chr3 (7-59)||(38505586-38505638)
chr3 (7-59)||(54437474-54437526)
[»] scaffold0517 (2 HSPs)
scaffold0517 (1-60)||(10314-10373)
scaffold0517 (1-59)||(11523-11581)
[»] scaffold0001 (2 HSPs)
scaffold0001 (1-59)||(120986-121044)
scaffold0001 (1-60)||(119592-119651)
[»] chr5 (12 HSPs)
chr5 (1-59)||(3936578-3936636)
chr5 (1-59)||(3938061-3938119)
chr5 (1-59)||(4565393-4565451)
chr5 (1-59)||(4777640-4777698)
chr5 (1-59)||(27571130-27571188)
chr5 (1-57)||(3205103-3205159)
chr5 (29-71)||(2217824-2217866)
chr5 (29-71)||(40029467-40029509)
chr5 (7-59)||(15599765-15599817)
chr5 (1-57)||(25254132-25254188)
chr5 (1-57)||(25317922-25317978)
chr5 (11-59)||(34911839-34911887)
[»] chr4 (23 HSPs)
chr4 (1-59)||(45618285-45618343)
chr4 (5-70)||(41933807-41933872)
chr4 (1-60)||(22204054-22204113)
chr4 (1-60)||(22205223-22205282)
chr4 (1-60)||(42359347-42359406)
chr4 (1-59)||(3879086-3879144)
chr4 (1-59)||(17281571-17281629)
chr4 (1-59)||(17370073-17370131)
chr4 (1-59)||(19674414-19674472)
chr4 (1-59)||(29060883-29060941)
chr4 (1-59)||(38166495-38166553)
chr4 (1-59)||(45619732-45619790)
chr4 (1-59)||(54121701-54121759)
chr4 (7-60)||(19675627-19675680)
chr4 (7-60)||(32699321-32699374)
chr4 (7-59)||(3880503-3880555)
chr4 (8-56)||(35054665-35054713)
chr4 (1-59)||(40198577-40198632)
chr4 (9-60)||(44705298-44705349)
chr4 (1-59)||(33137229-33137287)
chr4 (8-57)||(16916069-16916118)
chr4 (7-59)||(34659706-34659758)
chr4 (8-56)||(41935078-41935126)
[»] scaffold0002 (4 HSPs)
scaffold0002 (12-59)||(376381-376428)
scaffold0002 (7-60)||(374334-374387)
scaffold0002 (7-59)||(345904-345956)
scaffold0002 (1-59)||(344937-344995)
[»] scaffold0562 (1 HSPs)
scaffold0562 (1-59)||(9922-9980)
[»] scaffold0009 (1 HSPs)
scaffold0009 (7-59)||(202579-202631)
[»] scaffold0599 (1 HSPs)
scaffold0599 (9-55)||(6593-6639)


Alignment Details
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4183980 - 4184039
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  4183980 taccagggaccaaaacccaaacgcactatatttgcagggactaaaagcatattttagcca 4184039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 10717179 - 10717121
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||| || ||||||||||||| |||||||||||||||||    
T  10717179 taccagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcc 10717121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10718449 - 10718507
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||| || ||||||||||||| |||||||||||||||||    
T  10718449 taccagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcc 10718507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 28996892 - 28996835
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagc 58  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |||| |||||||||||    
T  28996892 taccagggaccaaaacccaaactcactatatttgcagggaccaaaatcatattttagc 28996835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 22534723 - 22534781
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||| || ||||||||||||  |||||||||||||||||    
T  22534723 taccagggaccaaaacccaaactcgctatatttgcagggatcaaaagcatattttagcc 22534781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 36588280 - 36588222
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||| ||||||| || ||||||||||||| |||||||||||||||||    
T  36588280 taccagggaccaaaacgcaaactcgctatatttgcagggaccaaaagcatattttagcc 36588222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 36589388 - 36589446
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||||||||||||| |||||| || |||||||||| ||||||| ||||||||||||    
T  36589388 taccaaggaccaaaacctaaactcgctatatttgcaggaactaaaatcatattttagcc 36589446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 28998000 - 28998053
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    |||||||||||||||||| || ||||||||||||| |||| |||||||||||||    
T  28998000 ggaccaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcca 28998053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 45517962 - 45518019
Alignment:
Q  2 accaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    |||| |||||||||||||||||| || || |||||||||| |||||||||||||||||    
T  45517962 accagggaccaaaacccaaactcgctatacttgcagggaccaaaagcatattttagcc 45518019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 22272271 - 22272329
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||||||||| || || ||||||| ||||| |||||||||||||||||    
T  22272271 taccagggaccaaaacccaaattcgctatatttgcggggaccaaaagcatattttagcc 22272329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 22533375 - 22533317
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||| || ||| | ||||||| |||||||||||||||||    
T  22533375 taccagggaccaaaacccaaactcgctatatatacagggaccaaaagcatattttagcc 22533317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 30124224 - 30124282
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||| ||||||  || ||||||||||||| |||||||||||||||||    
T  30124224 taccagggaccaaaactcaaacttgctttatttgcagggaccaaaagcatattttagcc 30124282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4182680 - 4182623
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagc 58  Q
    ||||| ||||||||||||||| || || ||||| ||||||| ||||||||||||||||    
T  4182680 taccagggaccaaaacccaaattcgctatatttacagggaccaaaagcatattttagc 4182623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 41846698 - 41846650
Alignment:
Q  8 gaccaaaacccaaactcactgtatttgcagggactaaaagcatatttta 56  Q
    |||||||| ||||||| ||| ||||| ||||||||||||||||||||||    
T  41846698 gaccaaaatccaaacttactatatttacagggactaaaagcatatttta 41846650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 41847187 - 41847239
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    |||||||||| |||| || || ||||||||| |||||||||||||||||||||    
T  41847187 ggaccaaaactcaaattcgctatatttgcagagactaaaagcatattttagcc 41847239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 3483685 - 3483635
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttag 57  Q
    |||||||||| ||||||| || ||||||||||||| |||| ||||||||||    
T  3483685 ggaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttag 3483635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 38456731 - 38456789
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||||| ||| |  || ||||||||||||| |||||||||||||||||    
T  38456731 taccagggaccaaaacctaaatttgctatatttgcagggaccaaaagcatattttagcc 38456789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38658539 - 38658481
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||||||||| || || |||||||| |||| | |||||||||||||||    
T  38658539 taccagggaccaaaacccaaattcgctatatttgcatggaccagaagcatattttagcc 38658481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 14712784 - 14712837
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||||||||||||||||| | ||||| ||| || |||| ||||||||||||||    
T  14712784 ggaccaaaacccaaactcattatatttacagagattaaaggcatattttagcca 14712837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 1420449 - 1420501
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||| | |||||||| || ||||||||||||| |||| ||||||||||||    
T  1420449 ggaccaatatccaaactcgctatatttgcagggaccaaaaacatattttagcc 1420501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 14197877 - 14197825
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||||| |||||||| |  ||||||||||||| |||| ||||||||||||    
T  14197877 ggaccaaaatccaaactcgccatatttgcagggaccaaaaacatattttagcc 14197825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 432 - 490
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |||| ||||||||||||    
T  432 taccagggaccaaaacccaaactcactatatttgcagggaccaaaatcatattttagcc 490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 30908 - 30966
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |||| ||||||||||||    
T  30908 taccagggaccaaaacccaaactcactatatttgcagggaccaaaaccatattttagcc 30966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29787 - 29729
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||| ||||||||  | ||||||||||||| |||||||||||||||||    
T  29787 taccagggaccaaaatccaaactcgttttatttgcagggaccaaaagcatattttagcc 29729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17066483 - 17066425
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||| || |||||||||||| ||||||||||||||||||    
T  17066483 taccagggaccaaaacccaaactcgctatatttgcagggattaaaagcatattttagcc 17066425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32197910 - 32197968
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||||||||||||||||| || || ||||||||||||| |||||||||||||||||    
T  32197910 taccaaggaccaaaacccaaattcgctatatttgcagggaccaaaagcatattttagcc 32197968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 12933477 - 12933419
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||  |||||||||| ||||||||||||| |||||||||||||||||    
T  12933477 taccagggaccaaaattcaaactcactatatttgcagggaccaaaagcatattttagcc 12933419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 31848145 - 31848203
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||||||||| || || |||||||||||||||||| ||||||||||||    
T  31848145 taccagggaccaaaacccaaattcgctatatttgcagggactaaaaacatattttagcc 31848203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 38742233 - 38742184
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatatttta 56  Q
    |||||||||||||||||| || |||||||||||||||||| |||||||||    
T  38742233 ggaccaaaacccaaactcgctatatttgcagggactaaaaacatatttta 38742184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 32544775 - 32544830
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatatttta 56  Q
    ||||||||||||||||||||| || || ||||||||||||| |||| |||||||||    
T  32544775 taccaaggaccaaaacccaaattcgctatatttgcagggaccaaaatcatatttta 32544830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 24195665 - 24195607
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||| |||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  24195665 taccagggagcaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcc 24195607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 31489940 - 31489993
Alignment:
Q  5 aaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagc 58  Q
    ||||||||||||||||||||  | ||||||||||||| |||| |||||||||||    
T  31489940 aaggaccaaaacccaaactcgttatatttgcagggaccaaaaacatattttagc 31489993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 5611514 - 5611566
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    |||| ||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  5611514 ggacgaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcc 5611566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11217072 - 11217127
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatatttta 56  Q
    ||||| |||||||||  ||||||| || ||||||||||||| ||||||||||||||    
T  11217072 taccagggaccaaaattcaaactcgctatatttgcagggaccaaaagcatatttta 11217127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12385708 - 12385763
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatatttta 56  Q
    ||||| ||||||||| |||||||| || ||||||||||||| |||| |||||||||    
T  12385708 taccagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 12385763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 31853600 - 31853549
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagc 58  Q
    ||||||||| ||||||||||  ||||||||||||| |||| |||||||||||    
T  31853600 ggaccaaaatccaaactcacaatatttgcagggaccaaaaacatattttagc 31853549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 32543538 - 32543483
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatatttta 56  Q
    ||||||||| |||||||||||||  || |||||| |||||| ||||||||||||||    
T  32543538 taccaaggatcaaaacccaaacttgctatatttgtagggaccaaaagcatatttta 32543483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 24197112 - 24197162
Alignment:
Q  9 accaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    |||||||| |||| || || ||||||||||||| |||||||||||||||||    
T  24197112 accaaaactcaaattcgctatatttgcagggaccaaaagcatattttagcc 24197162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35212126 - 35212068
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||||||||||||    ||||||||||||| |||| ||||||||||||    
T  35212126 taccagggaccaaaacccaaactcgtcatatttgcagggaccaaaaacatattttagcc 35212068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 39619800 - 39619850
Alignment:
Q  9 accaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    |||||||||||||||| |  |||||||| |||| |||||||||||||||||    
T  39619800 accaaaacccaaactcgccatatttgcatggaccaaaagcatattttagcc 39619850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 41694956 - 41695014
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||| ||||||| || ||||||||||||  |||| ||||||||||||    
T  41694956 taccagggaccaaaactcaaactcgctatatttgcagggatgaaaaacatattttagcc 41695014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 42255016 - 42254958
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||| ||||||| |  ||||| ||||||| |||||||||||||||||    
T  42255016 taccagggaccaaaactcaaactcgccatatttacagggaccaaaagcatattttagcc 42254958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 36748249 - 36748197
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    |||||||||||||||||| |  ||||||||||||| |||| |||||||||||||    
T  36748249 ggaccaaaacccaaactctca-tatttgcagggaccaaaaacatattttagcca 36748197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 554297 - 554245
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    |||||||||||||||||| || ||||||||||||| || |  |||||||||||    
T  554297 ggaccaaaacccaaactcgctatatttgcagggaccaatattatattttagcc 554245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 18810590 - 18810532
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |||| ||||||||||||    
T  18810590 taccagggaccaaaacccaaactcactatatttgcagggaccaaaatcatattttagcc 18810532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 14120640 - 14120747
Alignment:
Q  64 tttaattgttgaaccctaaaccttcatgttaatttcatcccttgccttaggatattggaacattcaaataaggtaatgctttaaataagttggggagaaa 163  Q
    ||||||||| |||||||||||||||||||| | ||  ||||||||| |||| ||  |||||||||||||||||| ||| |   || ||||||||||||||    
T  14120640 tttaattgtcgaaccctaaaccttcatgtttaatt-gtcccttgccataggctaggggaacattcaaataaggttatgttgggaacaagttggggagaaa 14120738  T
Q  164 agggaggtt 172  Q
    ||| |||||    
T  14120739 aggaaggtt 14120747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 20897498 - 20897557
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||| ||||||||||||||| ||||| ||||||||||||| |||| |||||||||||||    
T  20897498 taccagggaccaaaacccaaattcactatatttgcagggaccaaaaccatattttagcca 20897557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21165304 - 21165245
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||| |||||||||| ||||||| || ||||||||||||| ||||||||||||||||||    
T  21165304 taccagggaccaaaacacaaactcgctatatttgcagggaccaaaagcatattttagcca 21165245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 34998142 - 34998200
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||| || ||||||||||||  |||||||||||||||||    
T  34998142 taccagggaccaaaacccaaactcgctatatttgcagggatcaaaagcatattttagcc 34998200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 17000284 - 17000337
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    |||||||||||||||||||||  |||||||||||| ||||| ||||||||||||    
T  17000284 ggaccaaaacccaaactcactacatttgcagggaccaaaagtatattttagcca 17000337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 20391266 - 20391217
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatatttta 56  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||||||||    
T  20391266 ggaccaaaacccaaattcactatatttgcagggaccaaaagcatatttta 20391217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 17516214 - 17516164
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttag 57  Q
    ||||||||||||||||||||  ||||||||||||| |||| ||||||||||    
T  17516214 ggaccaaaacccaaactcaccatatttgcagggaccaaaaacatattttag 17516164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 21953264 - 21953206
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||| ||||| || || ||||||||||||| |||||||||||||||||    
T  21953264 taccagggaccaaaatccaaattcgctatatttgcagggaccaaaagcatattttagcc 21953206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 29291411 - 29291359
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    |||||||||||||||||| |  |||||||| |||| |||||||||||||||||    
T  29291411 ggaccaaaacccaaactcgccatatttgcaaggaccaaaagcatattttagcc 29291359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16995509 - 16995451
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||||||||| ||  | ||||||||||||| |||| ||||||||||||    
T  16995509 taccagggaccaaaacccaaattctttatatttgcagggaccaaaaacatattttagcc 16995451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 17517310 - 17517368
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||| ||||||| |  ||||||||||||| |||| ||||||||||||    
T  17517310 taccagggaccaaaactcaaactcgccatatttgcagggaccaaaaacatattttagcc 17517368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 30253547 - 30253596
Alignment:
Q  8 gaccaaaacccaaactcactgtatttgcagggactaaaagcatattttag 57  Q
    ||||||||| || |||| |||||||||||||||| |||| ||||||||||    
T  30253547 gaccaaaactcatactcgctgtatttgcagggaccaaaaacatattttag 30253596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 34989991 - 34989962
Alignment:
Q  29 tatttgcagggactaaaagcatattttagc 58  Q
    ||||||||||||||||||||||||||||||    
T  34989991 tatttgcagggactaaaagcatattttagc 34989962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 1972447 - 1972399
Alignment:
Q  12 aaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    |||||||||| || || ||||||||||||| |||| |||||||||||||    
T  1972447 aaaacccaaattcgctttatttgcagggaccaaaaacatattttagcca 1972399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 10805373 - 10805401
Alignment:
Q  62 tttttaattgttgaaccctaaaccttcat 90  Q
    |||||||||||||||||||||||||||||    
T  10805373 tttttaattgttgaaccctaaaccttcat 10805401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 19296377 - 19296413
Alignment:
Q  29 tatttgcagggactaaaagcatattttagccactttt 65  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  19296377 tatttgcagggactaaaaccatattttagccaatttt 19296413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 25977928 - 25977870
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |||| ||||||||||||    
T  25977928 taccagggaccaaaacccaaactcactatatttgcagggaccaaaaacatattttagcc 25977870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1778791 - 1778850
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||||||||||||||||||| || || |||||||||| || ||||||||||||||||||    
T  1778791 taccaaggaccaaaacccaaagtcgctatatttgcaggaaccaaaagcatattttagcca 1778850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11087107 - 11087049
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||||||||||| |||||||| || |||||||||||| ||||| ||||||||||||    
T  11087107 taccaaggaccaaaagccaaactcgctatatttgcagggattaaaatcatattttagcc 11087049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 2411320 - 2411261
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||| ||||||||||  | |||| || ||||||||||||||||||||||||||||||||    
T  2411320 taccagggaccaaaacttacactctctatatttgcagggactaaaagcatattttagcca 2411261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 1777527 - 1777469
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||| ||||||| || ||||||||||||| |||| ||||||||||||    
T  1777527 taccagggaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttagcc 1777469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2412429 - 2412487
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||| ||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  2412429 taccagggactaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcc 2412487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 25979252 - 25979310
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||||||||| || || ||||||||||||| |||| ||||||||||||    
T  25979252 taccagggaccaaaacccaaattcgctatatttgcagggaccaaaaacatattttagcc 25979310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 30843702 - 30843644
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||||||||||||  | ||||||||| || ||||||||||||||||||    
T  30843702 taccagggaccaaaacccaaactcgttatatttgcagtgattaaaagcatattttagcc 30843644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23861810 - 23861752
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||| |||||||| |  ||||||||||||| |||| ||||||||||||    
T  23861810 taccagggaccaaaatccaaactctccatatttgcagggaccaaaaacatattttagcc 23861752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 43788888 - 43788848
Alignment:
Q  29 tatttgcagggactaaaagcatattttagccactttttaat 69  Q
    |||||||||||||||||| ||||||||||||  ||||||||    
T  43788888 tatttgcagggactaaaaccatattttagcctatttttaat 43788848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9774889 - 9774947
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||| || ||||||||||||| |||||||||||||||||    
T  9774889 taccagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcc 9774947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 34934748 - 34934806
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||||||||||||||||| || || ||||||||||||| |||||||||||||||||    
T  34934748 taccaaggaccaaaacccaaattcgctatatttgcagggacaaaaagcatattttagcc 34934806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37396841 - 37396900
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    |||||||||||||||| |||| || || ||||||||||||| ||||||||||||||||||    
T  37396841 taccaaggaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagcca 37396900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 27264217 - 27264275
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  27264217 taccagggaccaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcc 27264275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 35911889 - 35911947
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||||||||||| ||||| || || ||||||||||||| |||||||||||||||||    
T  35911889 taccaaggaccaaaatccaaattcgctatatttgcagggaccaaaagcatattttagcc 35911947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 47038924 - 47038866
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||  || |||||||||||||||||| ||||||||||||    
T  47038924 taccagggaccaaaacccaaactagctatatttgcagggactaaaaacatattttagcc 47038866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 50164461 - 50164403
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    |||||||||||||||| ||||||| |  ||||||||||||| |||||||||||||||||    
T  50164461 taccaaggaccaaaactcaaactcgccatatttgcagggaccaaaagcatattttagcc 50164403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 20722530 - 20722471
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||| ||||||||||||||| || || ||||||||||||| ||||||| ||||||||||    
T  20722530 taccagggaccaaaacccaaattcgctatatttgcagggaccaaaagcacattttagcca 20722471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 30722174 - 30722115
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||||||||||||| |||||||  || |||| ||||||| |||||||||||||||||||    
T  30722174 taccaaggaccaaaatccaaacttgctatattcgcagggattaaaagcatattttagcca 30722115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 46075051 - 46075110
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||| |||||||||||||||||| || ||||||||||||  |||| |||||||||||||    
T  46075051 taccagggaccaaaacccaaactcgctatatttgcagggatcaaaaacatattttagcca 46075110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 17977560 - 17977618
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||||||||||||||||| || || ||||||||||||| |||| ||||||| ||||    
T  17977560 taccaaggaccaaaacccaaattcgctatatttgcagggaccaaaaccatatttaagcc 17977618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 27262966 - 27262908
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||| ||||||| || ||||||||||||| |||| ||||||||||||    
T  27262966 taccagggaccaaaacacaaactcgctatatttgcagggaccaaaaacatattttagcc 27262908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 39163025 - 39163083
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||| ||| |  ||||||||||||| |||||||||||||||||    
T  39163025 taccagggaccaaaacccaacctcgccatatttgcagggaccaaaagcatattttagcc 39163083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 23469970 - 23470035
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagccacttttt 66  Q
    ||||| ||| ||||||| |||||| || ||||||||||||| |||| ||||||||||||| |||||    
T  23469970 taccagggatcaaaaccgaaactcgctatatttgcagggaccaaaaacatattttagccatttttt 23470035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 2604138 - 2604186
Alignment:
Q  11 caaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    |||||||||||||| |  |||||||||||||||||| ||||||||||||    
T  2604138 caaaacccaaactccccatatttgcagggactaaaaacatattttagcc 2604186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 24609971 - 24609919
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    |||||||||||||||||| |  ||||||||||||| |||| ||||||||||||    
T  24609971 ggaccaaaacccaaactcgccatatttgcagggaccaaaaacatattttagcc 24609919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 48588968 - 48589020
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||||||||||||||||  ||||| ||||||| |||| ||||||||||||    
T  48588968 ggaccaaaacccaaactcaccatatttacagggaccaaaaacatattttagcc 48589020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 31475236 - 31475162
Alignment:
Q  104 cttgccttaggatattggaacattcaaataaggtaatgctttaaataagttggggagaaaagggaggttttgctt 178  Q
    ||||||||||||||  ||||||||||| || ||| ||| ||||   ||||||||||||||||||| |||| ||||    
T  31475236 cttgccttaggataggggaacattcaattagggttatggtttacgcaagttggggagaaaagggaagtttagctt 31475162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35721159 - 35721101
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||||||||| ||  | ||||||||||||| |||| ||||||||||||    
T  35721159 taccagggaccaaaacccaaattcgttatatttgcagggaccaaaaacatattttagcc 35721101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 37395691 - 37395633
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||  | || ||||||||||||| |||| ||||||||||||    
T  37395691 taccagggaccaaaacccaaatacgctatatttgcagggaccaaaaacatattttagcc 37395633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 39162882 - 39162822
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgt-atttgcagggactaaaagcatattttagcca 60  Q
    ||||||||||||||| |||||||| |  | |||||||||||| ||||||||| ||||||||    
T  39162882 taccaaggaccaaaatccaaactcgccattatttgcagggaccaaaagcataatttagcca 39162822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 22508793 - 22508720
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagccactttttaattgttg 74  Q
    |||||||||||||||| ||||||| || ||||||||||||| |||| ||||||||| ||  |||||||||||||    
T  22508793 taccaaggaccaaaactcaaactcgctatatttgcagggaccaaaatcatattttaacctatttttaattgttg 22508720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 43641201 - 43641132
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagccactttttaatt 70  Q
    ||||| |||||| || |||||||| || |||||||||||||||||||||||||||||||| |||| ||||    
T  43641201 taccagggaccataatccaaactcgctatatttgcagggactaaaagcatattttagccaattttaaatt 43641132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 52708625 - 52708677
Alignment:
Q  8 gaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||||||||||||||| || ||||||||||||| ||||||||||||||||||    
T  52708625 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcca 52708677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 39820605 - 39820663
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  39820605 taccagggaccaaaacccaaactcgctatatttgcagggaccaaaaccatattttagcc 39820663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 52403125 - 52403183
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||| |  ||||||||||||| |||||||||||||||||    
T  52403125 taccagggaccaaaacccaaactcgccatatttgcagggaccaaaagcatattttagcc 52403183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 977847 - 977906
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||||||||||||||||||||||    ||||||||||||| |||||||||||| |||||    
T  977847 taccaaggaccaaaacccaaactcgtcatatttgcagggaccaaaagcatatttcagcca 977906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 42446577 - 42446526
Alignment:
Q  8 gaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||||||||||||| |  ||||||||||||| |||||||||||||||||    
T  42446577 gaccaaaacccaaactcgccatatttgcagggaccaaaagcatattttagcc 42446526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 42447788 - 42447846
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||||||||||| || ||||||||||| |  |||||||||||||||||    
T  42447788 taccagggaccaaaacccaaactaaccgtatttgcaggaatcaaaagcatattttagcc 42447846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 45268571 - 45268629
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||  || |||||||||||| ||||| ||||||||||||    
T  45268571 taccagggaccaaaacccaaacttgctatatttgcagggattaaaaacatattttagcc 45268629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 52401075 - 52401017
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||| |  ||||||||||||| |||| ||||||||||||    
T  52401075 taccagggaccaaaacccaaactcgccatatttgcagggaccaaaaacatattttagcc 52401017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 53121360 - 53121302
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||| ||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  53121360 taccagggactaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcc 53121302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 53122472 - 53122530
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||||  | |||| || |||||||||||||||||||||||||||||||    
T  53122472 taccagggaccaaaacttacactctctatatttgcagggactaaaagcatattttagcc 53122530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 20488424 - 20488368
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttag 57  Q
    ||||| ||||||||||||||| ||||  ||||||||||||| |||| ||||||||||    
T  20488424 taccagggaccaaaacccaaattcaccatatttgcagggaccaaaaacatattttag 20488368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 39819370 - 39819314
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttag 57  Q
    ||||| |||||||||  ||||||| || |||||||||||||||||| ||||||||||    
T  39819370 taccagggaccaaaattcaaactcgctatatttgcagggactaaaaccatattttag 39819314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 40477381 - 40477433
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||||||||||||||  | ||||||||||||| |||| ||||||||||||    
T  40477381 ggaccaaaacccaaactcgttatatttgcagggaccaaaatcatattttagcc 40477433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 46026128 - 46026076
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||||| |||||||| || ||||||||||||| |||| ||||||||||||    
T  46026128 ggaccaaaatccaaactcgctatatttgcagggaccaaaaacatattttagcc 46026076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 4705739 - 4705680
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||| ||||||||||| |||||| |  ||||||||||||  ||||||||||||||||||    
T  4705739 taccagggaccaaaacctaaactcgccatatttgcagggatcaaaagcatattttagcca 4705680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 48033116 - 48033057
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||| ||||||||| ||||||||||  |||||||| |||| |||| |||||||||||||    
T  48033116 taccagggaccaaaatccaaactcaccatatttgcaaggaccaaaaacatattttagcca 48033057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 11914842 - 11914888
Alignment:
Q  9 accaaaacccaaactcactgtatttgcagggactaaaagcatatttt 55  Q
    ||||||||||||| || || ||||||||||||||||||||| |||||    
T  11914842 accaaaacccaaattcgctatatttgcagggactaaaagcacatttt 11914888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 40476272 - 40476222
Alignment:
Q  8 gaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagc 58  Q
    |||||||| |||||||| || ||||||||||||| |||| |||||||||||    
T  40476272 gaccaaaatccaaactcgctatatttgcagggaccaaaaacatattttagc 40476222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 46027418 - 46027476
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||  ||||||| || ||||||||||||| ||||| |||||||||||    
T  46027418 taccagggaccaaaattcaaactcgctatatttgcagggaccaaaagtatattttagcc 46027476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 46104401 - 46104343
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||| ||||| ||||||| || ||||||||||||| |||| ||||||||||||    
T  46104401 taccagggacaaaaactcaaactcgctatatttgcagggaccaaaatcatattttagcc 46104343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 47433810 - 47433868
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||| |||| || || ||||||||||||| |||| ||||||||||||    
T  47433810 taccagggaccaaaactcaaattcgctatatttgcagggaccaaaaccatattttagcc 47433868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 20489359 - 20489416
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagc 58  Q
    ||||| ||||||||||||||||||    ||||||||||||| |||| |||||||||||    
T  20489359 taccagggaccaaaacccaaactcgtcatatttgcagggaccaaaaacatattttagc 20489416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 32637197 - 32637246
Alignment:
Q  9 accaaaacccaaactcactgtatttgcagggactaaaagcatattttagc 58  Q
    |||||||||||||||| ||  |||| ||||||| ||||||||||||||||    
T  32637197 accaaaacccaaactcgctacatttacagggaccaaaagcatattttagc 32637246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 45267363 - 45267306
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagc 58  Q
    ||||| |||||||||| ||||||| || ||||||||||||  |||| |||||||||||    
T  45267363 taccagggaccaaaactcaaactcgctatatttgcagggatcaaaaacatattttagc 45267306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 13584337 - 13584377
Alignment:
Q  29 tatttgcagggactaaaagcatattttagccactttttaat 69  Q
    |||||||||||||||||| ||||||||||||  ||||||||    
T  13584337 tatttgcagggactaaaaccatattttagcctttttttaat 13584377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 20585651 - 20585703
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||||| |||||||| || ||||||||||||  |||| ||||||||||||    
T  20585651 ggaccaaaatccaaactcgctatatttgcagggatcaaaaacatattttagcc 20585703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 20802896 - 20802848
Alignment:
Q  11 caaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    |||||||||||||| || |||||| |||||||| || ||||||||||||    
T  20802896 caaaacccaaactcgctatatttgtagggactagaaacatattttagcc 20802848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 38505586 - 38505638
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    |||||||||| ||||||| |  ||||||||||||  |||||||||||||||||    
T  38505586 ggaccaaaactcaaactcgccatatttgcagggagcaaaagcatattttagcc 38505638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 54437474 - 54437526
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    |||||||||| |||| || || ||||||||||||| |||| ||||||||||||    
T  54437474 ggaccaaaactcaaattcgctatatttgcagggaccaaaaacatattttagcc 54437526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 10373 - 10314
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    |||||||||||||||| |||| || || ||||||||||||| ||||||||||||||||||    
T  10373 taccaaggaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagcca 10314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11523 - 11581
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||  | || ||||||||||||| |||| ||||||||||||    
T  11523 taccagggaccaaaacccaaatacgctatatttgcagggaccaaaaacatattttagcc 11581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 120986 - 121044
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||||||||||||  | ||||||||||||| |||||||||||||||||    
T  120986 taccagggaccaaaacccaaactcgttatatttgcagggaccaaaagcatattttagcc 121044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 119651 - 119592
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||| |||||||||| |||| || || ||||||||||||| ||||||||||||||||||    
T  119651 taccagggaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagcca 119592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3936636 - 3936578
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  3936636 taccagggaccaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcc 3936578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 3938061 - 3938119
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||||| |||||  || |||||||||||||||||||||||||||||||    
T  3938061 taccagggaccaaaacctaaacttgctatatttgcagggactaaaagcatattttagcc 3938119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 4565451 - 4565393
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||| || |||||| ||||||||||| ||||||||||||    
T  4565451 taccagggaccaaaacccaaactcgctatatttgtagggactaaaaacatattttagcc 4565393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 4777698 - 4777640
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||| ||||||| ||| |||||||| ||||||||||||||||| ||||    
T  4777698 taccagggaccaaaatccaaacttactatatttgcaaggactaaaagcatatttaagcc 4777640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 27571130 - 27571188
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||| |||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  27571130 taccagggatcaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcc 27571188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3205103 - 3205159
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttag 57  Q
    ||||| |||||||||||||||||||   ||||||||||||  |||||||||||||||    
T  3205103 taccagggaccaaaacccaaactcatcatatttgcagggatcaaaagcatattttag 3205159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 2217824 - 2217866
Alignment:
Q  29 tatttgcagggactaaaagcatattttagccactttttaattg 71  Q
    |||||||||||||||||| |||||||||||| ||||| |||||    
T  2217824 tatttgcagggactaaaaccatattttagcctcttttaaattg 2217866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 40029467 - 40029509
Alignment:
Q  29 tatttgcagggactaaaagcatattttagccactttttaattg 71  Q
    |||||||||||||||||| ||||||||||||| | ||||||||    
T  40029467 tatttgcagggactaaaaccatattttagccattatttaattg 40029509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 15599817 - 15599765
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||||||||||| || |  |||||| |||||| |||||||||||||||||    
T  15599817 ggaccaaaacccaaattcgccatatttgtagggaccaaaagcatattttagcc 15599765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 25254132 - 25254188
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttag 57  Q
    ||||| ||| |||||| |||||||  | ||||||||||||| |||||||||||||||    
T  25254132 taccagggatcaaaactcaaactctatatatttgcagggaccaaaagcatattttag 25254188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 25317922 - 25317978
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttag 57  Q
    ||||| ||| |||||| |||||||  | ||||||||||||| |||||||||||||||    
T  25317922 taccagggatcaaaactcaaactctatatatttgcagggaccaaaagcatattttag 25317978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 34911839 - 34911887
Alignment:
Q  11 caaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||| || ||||||||||||| |||| ||||||||||||    
T  34911839 caaaatccaaactcgctatatttgcagggaccaaaatcatattttagcc 34911887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 45618343 - 45618285
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||| || ||||||||||||| |||||||||| ||||||    
T  45618343 taccagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatatattagcc 45618285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 41933872 - 41933807
Alignment:
Q  5 aaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagccactttttaatt 70  Q
    |||||||||||||||||||| || ||||||||| ||| |||| ||||||||||||  |||||||||    
T  41933872 aaggaccaaaacccaaactcgctatatttgcagagaccaaaatcatattttagcctatttttaatt 41933807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 22204113 - 22204054
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||| |||| ||||||||||||| || ||||||||||||| |||| |||||||||||||    
T  22204113 taccagggactaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcca 22204054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 22205223 - 22205282
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||| ||||||||||  | |||| || ||||||||||||||||||||||||||||||||    
T  22205223 taccagggaccaaaacttacactctctatatttgcagggactaaaagcatattttagcca 22205282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 42359347 - 42359406
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||| ||||||||| |||||||| || ||||||||||||| |||| |||||||||||||    
T  42359347 taccagggaccaaaatccaaactcgctatatttgcagggaccaaaaacatattttagcca 42359406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3879144 - 3879086
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||| |||||||| || ||||||||||||  |||||||||||||||||    
T  3879144 taccagggaccaaaatccaaactcgctatatttgcagggatcaaaagcatattttagcc 3879086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17281629 - 17281571
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||| ||||| || || ||||||||||||||||||||| |||||||||    
T  17281629 taccagggaccaaaatccaaattcgctatatttgcagggactaaaagcacattttagcc 17281571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17370131 - 17370073
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||| ||||| || || ||||||||||||||||||||| |||||||||    
T  17370131 taccagggaccaaaatccaaattcgctatatttgcagggactaaaagcacattttagcc 17370073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 19674472 - 19674414
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||| ||||||| || |||||||| |||| |||||||||||||||||    
T  19674472 taccagggaccaaaactcaaactcgctatatttgcaaggaccaaaagcatattttagcc 19674414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 29060883 - 29060941
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    |||||||||||||||  ||||||| || |||||||||||| ||||| ||||||||||||    
T  29060883 taccaaggaccaaaattcaaactcgctatatttgcagggattaaaaacatattttagcc 29060941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38166553 - 38166495
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||| ||||||| |||||||| || |||||||||||| ||||| ||||||||||||    
T  38166553 taccaagcaccaaaatccaaactcgctatatttgcagggattaaaaacatattttagcc 38166495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 45619732 - 45619790
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||| ||||||| |||||| || |||||||||||||||||| ||||||||||||    
T  45619732 taccagggaacaaaacctaaactcgctatatttgcagggactaaaaacatattttagcc 45619790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 54121701 - 54121759
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||| | |||||||||||||  |||| ||||||||||||    
T  54121701 taccagggaccaaaacccaaactcgccgtatttgcagggagcaaaatcatattttagcc 54121759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 19675627 - 19675680
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||||||| ||||||||  | ||||||||||||| ||||||||||||||||||    
T  19675627 ggaccaaaatccaaactcgttatatttgcagggaccaaaagcatattttagcca 19675680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 32699321 - 32699374
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    |||||||||||||||||| || ||||| ||||||| |||| |||||||||||||    
T  32699321 ggaccaaaacccaaactcgctatatttacagggaccaaaaacatattttagcca 32699374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 3880503 - 3880555
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    |||||||||||||||||| || |||||||||| || |||| ||||||||||||    
T  3880503 ggaccaaaacccaaactcgctatatttgcaggaaccaaaaacatattttagcc 3880555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 35054713 - 35054665
Alignment:
Q  8 gaccaaaacccaaactcactgtatttgcagggactaaaagcatatttta 56  Q
    |||||||||||||| || || |||||||||||||||||| |||||||||    
T  35054713 gaccaaaacccaaattcgctatatttgcagggactaaaatcatatttta 35054665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 40198632 - 40198577
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||| || |||||||||||   |||||||||||||||||    
T  40198632 taccagggaccaaaacccaaactcgctatatttgcaggg---aaaagcatattttagcc 40198577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 44705349 - 44705298
Alignment:
Q  9 accaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    ||||||||||||| ||||| ||||||||| ||| |||| |||||||||||||    
T  44705349 accaaaacccaaattcactatatttgcagagaccaaaaacatattttagcca 44705298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 33137229 - 33137287
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||| ||||||||||||| || ||||||||||||  |||| ||||||||||||    
T  33137229 taccagggactaaaacccaaactcgctatatttgcagggatcaaaaacatattttagcc 33137287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 16916118 - 16916069
Alignment:
Q  8 gaccaaaacccaaactcactgtatttgcagggactaaaagcatattttag 57  Q
    ||||||||| |||||||||  ||||||||||||| ||||| |||||||||    
T  16916118 gaccaaaactcaaactcaccatatttgcagggaccaaaagtatattttag 16916069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 34659758 - 34659706
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    |||||||||||  ||||| |  ||||||||||||| |||||||||||||||||    
T  34659758 ggaccaaaaccttaactcgccatatttgcagggaccaaaagcatattttagcc 34659706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 41935078 - 41935126
Alignment:
Q  8 gaccaaaacccaaactcactgtatttgcagggactaaaagcatatttta 56  Q
    |||||||||||||||||  | ||||||||||||| |||| |||||||||    
T  41935078 gaccaaaacccaaactcgttatatttgcagggaccaaaaacatatttta 41935126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 376381 - 376428
Alignment:
Q  12 aaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||||||||| || ||||||||||||| |||||||||||||||||    
T  376381 aaaacccaaactcgctatatttgcagggaccaaaagcatattttagcc 376428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 374387 - 374334
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcca 60  Q
    |||||||||||||||||| || ||||||||||||  |||| |||||||||||||    
T  374387 ggaccaaaacccaaactcgctatatttgcagggatcaaaatcatattttagcca 374334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 345904 - 345956
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||||||||||| || || ||||||||||||| |||| ||||||||||||    
T  345904 ggaccaaaacccaaattcgctatatttgcagggaccaaaaacatattttagcc 345956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 344995 - 344937
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| |||||||||||||||||| |  ||||||||||||| |||| ||||||| ||||    
T  344995 taccagggaccaaaacccaaactcgccatatttgcagggaccaaaatcatatttgagcc 344937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9980 - 9922
Alignment:
Q  1 taccaaggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||| ||||||||| |||||||| || ||||||||||||  |||||||||||||||||    
T  9980 taccagggaccaaaatccaaactcgctatatttgcagggatcaaaagcatattttagcc 9922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 202631 - 202579
Alignment:
Q  7 ggaccaaaacccaaactcactgtatttgcagggactaaaagcatattttagcc 59  Q
    ||||||||| ||||||||  | ||||||||||||| |||||||||||||||||    
T  202631 ggaccaaaatccaaactcgttatatttgcagggaccaaaagcatattttagcc 202579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 6593 - 6639
Alignment:
Q  9 accaaaacccaaactcactgtatttgcagggactaaaagcatatttt 55  Q
    ||||||||||||| || || ||||||||||||||||||||| |||||    
T  6593 accaaaacccaaattcgctatatttgcagggactaaaagcacatttt 6639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University