View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18523_low_12 (Length: 236)
Name: NF18523_low_12
Description: NF18523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18523_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 54640162 - 54640398
Alignment:
| Q |
1 |
aattatgatgagattagaaagagtaccatctatttatatgccccgataatggttgtaggaaaaactgttgtggttaggaattannnnnnngcttgggtaa |
100 |
Q |
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| T |
54640162 |
aattatgatgcgattagaaagagtaccatctatttatatgccccgataacggttgtaggaaaaactgttgtggttaggaattatttttttgcttgggtaa |
54640261 |
T |
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| Q |
101 |
agcactaaagcttgaactagttgacttgacctttcaatttta-------------tcttgaagtccttaaaaaaggaagcccggtgcactaaagctcctt |
187 |
Q |
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| T |
54640262 |
agcactaaagcttgaactagttgacttgacctttcaattttattactttgcacactcttgaagtccttaaaaaaggaagcccggtgcactaaagctcctt |
54640361 |
T |
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| Q |
188 |
catatgtagggtccgtaagggtcccaccattttggtg |
224 |
Q |
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| T |
54640362 |
catatgtagggtccgtaaaggtcccaccattttggtg |
54640398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 54175204 - 54175131
Alignment:
| Q |
154 |
ttaaaaaaggaagcccggtgcactaaagctccttcatatgtagggtcc---gtaagggtcccaccattttggtg |
224 |
Q |
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| T |
54175204 |
ttaaaaagggcagcccggtgcactaaagctcccgcatatgcagggtccggggaaggggtcccaccattttggtg |
54175131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 44403552 - 44403620
Alignment:
| Q |
155 |
taaaaaaggaagcccggtgcactaaagctccttcatatgtagggtcc--gtaagggtcccaccattttg |
221 |
Q |
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| T |
44403552 |
taaaaaaggcagcccggtgcactaaagcttcagcatacgtagggtccgggaaggggtcccaccattttg |
44403620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 26457864 - 26457804
Alignment:
| Q |
156 |
aaaaaaggaagcccggtgcactaaagctccttcatatgtagggtccgtaagggtcccacca |
216 |
Q |
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| T |
26457864 |
aaaaaaggaaacccggtgcactaaagctccctcatacgcaaggtcaggaggggtcccacca |
26457804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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