View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18523_low_13 (Length: 214)
Name: NF18523_low_13
Description: NF18523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18523_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 40900284 - 40900497
Alignment:
| Q |
1 |
tattattgtgagcatcaacctaaaatggatttagctcctctatattgagtaattcacttaactagaatttgattttaataacaatatattgaaaatgtaa |
100 |
Q |
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| T |
40900284 |
tattattgtgagcatcaacctaaaatggatttagctcctctatattgagtaattcacttaactagaatttgattttaataactatatattgaaaatgtaa |
40900383 |
T |
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| Q |
101 |
acaaatttcaagaatatatccttaacctccatgaatttgattttaactagaaatggttaaacttaacaagacaacaaacaattcaagaatagaaacagga |
200 |
Q |
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| T |
40900384 |
acaaatttcaaaaatatatccttaacctccatgaatttgattttaactagaagtggttaaacttaacaagacaacaaacaattcaagaatagaaacagga |
40900483 |
T |
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| Q |
201 |
taccaatgtttcat |
214 |
Q |
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|||||||||||||| |
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| T |
40900484 |
taccaatgtttcat |
40900497 |
T |
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