View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18523_low_5 (Length: 369)
Name: NF18523_low_5
Description: NF18523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18523_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 14596851 - 14597047
Alignment:
| Q |
1 |
ccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacga |
100 |
Q |
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| T |
14596851 |
ccatcttagcacctggtgtagtcgatcagtaagattaattggtgcagatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacga |
14596950 |
T |
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| Q |
101 |
ttgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
197 |
Q |
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| T |
14596951 |
ttgtgcatgcggtaccctgtaaccacatcctctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
14597047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 14611719 - 14611523
Alignment:
| Q |
1 |
ccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacga |
100 |
Q |
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| T |
14611719 |
ccatcttagcacctggtgtagtcgatcagtaaggttaattggtgctgatccgcgaaatgcatctcgcttggtcacgcaatatacagaacgccatccacgg |
14611620 |
T |
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| Q |
101 |
ttgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
197 |
Q |
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| T |
14611619 |
ttgtgcatgcggtaacctgtaacgacgtcctctgtcactgatccataaatccatcccactctgtctccccattctgtcttctcttcgtacctacatg |
14611523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 248 - 362
Target Start/End: Original strand, 14597098 - 14597212
Alignment:
| Q |
248 |
gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca |
347 |
Q |
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| T |
14597098 |
gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca |
14597197 |
T |
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| Q |
348 |
gacacaggttctgct |
362 |
Q |
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||||||| ||||||| |
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| T |
14597198 |
gacacagattctgct |
14597212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 15417068 - 15417259
Alignment:
| Q |
1 |
ccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacga |
100 |
Q |
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| T |
15417068 |
ccatcttagaacttggtgtaaacgatcggtgagatttataggtgctgttccacggaaagcgtctctttttgtgatgcaatatatcgatctccatccacgg |
15417167 |
T |
|
| Q |
101 |
ttgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacct |
192 |
Q |
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|||||||| | ||| || || || || |||||||||||||| ||||||||||| || | ||| |||||||||||||| || || |||||||| |
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| T |
15417168 |
ttgtgcattctgtaaccagttacaacatcttctgtcactgatccataaatccaacctattctatctccccattctgttttatcctcatacct |
15417259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 191
Target Start/End: Original strand, 12192718 - 12192859
Alignment:
| Q |
50 |
ccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaa |
149 |
Q |
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||||| || ||||| | |||||| |||||||| ||||| | |||||| | ||||||||| | || ||||| || || || || || || ||||| |||| |
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| T |
12192718 |
ccacggaaggcatccctcttggtcacacaatacacagacctccatcctctattgtgcattctataacctgtcacaacatcctcggttaccgacccgtaaa |
12192817 |
T |
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| Q |
150 |
tccatcccactctttctccccattctgtcttgtcttcatacc |
191 |
Q |
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| T |
12192818 |
tccatccaactctatctccccattcggtcttatcttcatacc |
12192859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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