View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18523_low_7 (Length: 305)

Name: NF18523_low_7
Description: NF18523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18523_low_7
NF18523_low_7
[»] chr4 (8 HSPs)
chr4 (196-288)||(27074673-27074765)
chr4 (196-288)||(27154766-27154858)
chr4 (31-100)||(27074509-27074577)
chr4 (31-100)||(27154600-27154668)
chr4 (41-98)||(6800180-6800237)
chr4 (46-98)||(6804622-6804674)
chr4 (1-38)||(27074438-27074475)
chr4 (1-38)||(27154529-27154566)
[»] chr5 (1 HSPs)
chr5 (41-98)||(41361468-41361525)
[»] chr3 (1 HSPs)
chr3 (49-104)||(53833662-53833717)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 196 - 288
Target Start/End: Original strand, 27074673 - 27074765
Alignment:
Q  196 gcacgagcgtatcattaccactttccataggtgcaaatgaggagtgtgaattctgcctatcttccctagttcttagagagatgtgaaacgaac 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27074673 gcacgagcgtatcattaccactttccataggtgcaaatgaggagtgtgaattctgcctatcttccctagttcttagagagatgtgaaacgaac 27074765  T

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Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 196 - 288
Target Start/End: Original strand, 27154766 - 27154858
Alignment:
Q  196 gcacgagcgtatcattaccactttccataggtgcaaatgaggagtgtgaattctgcctatcttccctagttcttagagagatgtgaaacgaac 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27154766 gcacgagcgtatcattaccactttccataggtgcaaatgaggagtgtgaattctgcctatcttccctagttcttagagagatgtgaaacgaac 27154858  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 27074509 - 27074577
Alignment:
Q  31 gctttgagcaagtgtgtttgcacgcctcagccaataaccgataagttctcccgttcttctttattttaat 100  Q
    ||||| ||||||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||||||    
T  27074509 gctttaagcaagtgtgtttgcacacctcagccaataa-cgataaattctccccttcttctttattttaat 27074577  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 27154600 - 27154668
Alignment:
Q  31 gctttgagcaagtgtgtttgcacgcctcagccaataaccgataagttctcccgttcttctttattttaat 100  Q
    ||||| ||||||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||||||    
T  27154600 gctttaagcaagtgtgtttgcacacctcagccaataa-cgataaattctccccttcttctttattttaat 27154668  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 6800237 - 6800180
Alignment:
Q  41 agtgtgtttgcacgcctcagccaataaccgataagttctcccgttcttctttatttta 98  Q
    |||| |||||||||||||||||||  ||||||||||||| || |||||||||||||||    
T  6800237 agtgcgtttgcacgcctcagccaaggaccgataagttcttcctttcttctttatttta 6800180  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 6804674 - 6804622
Alignment:
Q  46 gtttgcacgcctcagccaataaccgataagttctcccgttcttctttatttta 98  Q
    |||||||||||||||||||  ||||||||||||| || |||||||||||||||    
T  6804674 gtttgcacgcctcagccaaggaccgataagttcttcctttcttctttatttta 6804622  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27074438 - 27074475
Alignment:
Q  1 gaagtggttgttgtatcttggagatcactagctttgag 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  27074438 gaagtggttgttgtatcttggagattactagctttgag 27074475  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27154529 - 27154566
Alignment:
Q  1 gaagtggttgttgtatcttggagatcactagctttgag 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  27154529 gaagtggttgttgtatcttggagattactagctttgag 27154566  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 41361468 - 41361525
Alignment:
Q  41 agtgtgtttgcacgcctcagccaataaccgataagttctcccgttcttctttatttta 98  Q
    |||| |||||||||||||||||||  ||||||||||||| || |||||||||||||||    
T  41361468 agtgcgtttgcacgcctcagccaaggaccgataagttcttcctttcttctttatttta 41361525  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 53833662 - 53833717
Alignment:
Q  49 tgcacgcctcagccaataaccgataagttctcccgttcttctttattttaatgaga 104  Q
    ||||||||||||||||  | ||||||||||| || ||||||||||||||| |||||    
T  53833662 tgcacgcctcagccaacgatcgataagttcttcctttcttctttattttactgaga 53833717  T

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