View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18523_low_9 (Length: 264)
Name: NF18523_low_9
Description: NF18523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18523_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 32854769 - 32854517
Alignment:
| Q |
1 |
tatgtattgacaaggcactgcaataaaaagaaacattactgtcaatctataactttcacaatttctgttccttttattcctctttctccaacagttttgg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
32854769 |
tatgtattgacaaggcactgcaatgaaaagaaacattactgtcaatctataactttcacattttctgttccttttattcctctttatccaacagttttgg |
32854670 |
T |
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| Q |
101 |
tatcagagcagcctggtttatttnnnnnnnnnnnnnnnnnggaatggcaacgtcaaattcaaattcaatcttctcttacacaacaaatcaaattccagtt |
200 |
Q |
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|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32854669 |
taccagagcagcctggtttatttataaaaaaaaaaa----ggaatggcaacgtcaaattcaaattcaatcttctcttacacaacaaatcaaattccagtt |
32854574 |
T |
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| Q |
201 |
ttcaatggtgaacactatgattactggaattctcaaatggaaactatattcatctct |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32854573 |
ttcaatggtgaacactatgattactggaattctcaaatggaaactatatttatctct |
32854517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 37177908 - 37177652
Alignment:
| Q |
1 |
tatgtattgacaaggcactgcaataaaaagaaacattactgtcaatctataactttcacaatttctgttccttttattcctctttctccaacagttttgg |
100 |
Q |
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||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37177908 |
tatgtattgacaaggcactacaatgaaaagaaacattactttcaatctataactttcacgttttctgttccttttattcctctttctccaacagttttgg |
37177809 |
T |
|
| Q |
101 |
tatcagagcagcctggtttatttnnnnnnnnnnnnnnnnnggaatggcaacgtcaaattcaaattcaatcttctcttacacaacaaatcaaattccagtt |
200 |
Q |
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|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37177808 |
taccagagcagcctggtttattcaaaaaataaaaaaaaaaggaatggcaacgtcaaattcaaattcaatcttctcttacacaacaaatcaaattccagtt |
37177709 |
T |
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| Q |
201 |
ttcaatggtgaacactatgattactggaattctcaaatggaaactatattcatctct |
257 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37177708 |
ttcaattgtgaacactatgattactggaattctcaaatggaaactatatttatctct |
37177652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 32850474 - 32850382
Alignment:
| Q |
1 |
tatgtattgacaaggcactgcaataaaaagaaacattactgtcaatctataactttcacaatttctgttccttttattcctctttctccaaca |
93 |
Q |
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| T |
32850474 |
tatgtattgacaaggcactgcaatgaaaagaaacattactgtcaatctataactttcacattttctgttccttttattcctctttctccaaca |
32850382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 37173617 - 37173525
Alignment:
| Q |
1 |
tatgtattgacaaggcactgcaataaaaagaaacattactgtcaatctataactttcacaatttctgttccttttattcctctttctccaaca |
93 |
Q |
| |
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||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37173617 |
tatgtattgacaaggcactacaatgaaaagaaacattactttcaatctataactttcacgttttctgttccttttattcctctttctccaaca |
37173525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 39163854 - 39163760
Alignment:
| Q |
1 |
tatgtattgacaaggcactgcaataaaaagaaacattactgtcaatctataactttcacaatttctgttccttttattcctctttctccaacagt |
95 |
Q |
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||||||||||||||| ||| |||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39163854 |
tatgtattgacaaggaactacaatgaaaagaaacattactttcaatctataactttcacgttttctgttccttttattcctctttctccaacagt |
39163760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4479732 - 4479638
Alignment:
| Q |
1 |
tatgtattgacaaggcactgcaataaaaagaaacattactgtcaatctata--actttcacaatttctgttccttttattcctctttctccaaca |
93 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4479732 |
tatgtattgacaacgcactgcaataaaaagaaacattactttcaatttatataactttcacattttctgttccttttattcctctttctccaaca |
4479638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14434626 - 14434671
Alignment:
| Q |
1 |
tatgtattgacaaggcactgcaataaaaagaaacattactgtcaat |
46 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||| |||| |
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| T |
14434626 |
tatgtattgacaaggcactgcaatgaaaagaaacattgctgccaat |
14434671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 424330 - 424290
Alignment:
| Q |
1 |
tatgtattgacaaggcactgcaataaaaagaaacattactg |
41 |
Q |
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|||||||||||| || |||||||| |||||||||||||||| |
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| T |
424330 |
tatgtattgacatggtactgcaatgaaaagaaacattactg |
424290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6154413 - 6154373
Alignment:
| Q |
1 |
tatgtattgacaaggcactgcaataaaaagaaacattactg |
41 |
Q |
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|||||||||||| || |||||||| |||||||||||||||| |
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| T |
6154413 |
tatgtattgacatggtactgcaatgaaaagaaacattactg |
6154373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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