View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18524_high_2 (Length: 415)
Name: NF18524_high_2
Description: NF18524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18524_high_2 |
 | |
|
| [»] scaffold0154 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0154 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 20064 - 20450
Alignment:
| Q |
19 |
caacttccctgcaatgaagtcatacgaaaattcaagtattgcaacttgtaatgtaagcatcgaaggaacgatatattagtaaggctagcacctaatatct |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20064 |
caacttccctgcaatgaagtcataggaaaattcaagtattgcaacttgtaa-----gcatcgaaggaacgatatattagtaaggctagcacctaatatct |
20158 |
T |
|
| Q |
119 |
tcccactcattccattcaaaagaaaggcatgggagac-ataaaaataaagaagattacaataatgttctcctaaataagagtcaatcaagttgattttta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20159 |
tcccactcattccattcaaaagaaaggcatgggagaccataaaaataaagaagattacaataatgttctcctaaataagagtcaatcaagttgattttta |
20258 |
T |
|
| Q |
218 |
ttgttagtttgaaattattatctaatgttaaaacactccattaatatatcttgaatatatgaaataaatctattagaaaaaacatgttaacatatatggt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20259 |
ttgttagtttgaaattattatctaatgttaaaacactccattaaaatatcttgaatatatgaaataaatctattagaaaaaacatgttaaaatatatggt |
20358 |
T |
|
| Q |
318 |
gactgtgtgtttattttgttggctgttaaaagggaacattgtcatgcttggacagcttggtttactacattggccaaatcaagaataattta |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20359 |
gactgtgtgtttattttgttggctgttaaaagggaacattgtcatgcttgtacagcttggtttactacattggccaaatcaagaataattta |
20450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 340 - 409
Target Start/End: Original strand, 33413 - 33482
Alignment:
| Q |
340 |
ctgttaaaagggaacattgtcatgcttggacagcttggtttactacattggccaaatcaagaataattta |
409 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33413 |
ctgtcaaaaaggaacattgtcatgcttggacagcttggtttacttcattggccaaatcaagaataattta |
33482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University