View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18524_high_5 (Length: 229)
Name: NF18524_high_5
Description: NF18524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18524_high_5 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 31138899 - 31139119
Alignment:
| Q |
9 |
ccttgctaataacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgaccttgatctacctttttaacatgagtctttctggt |
108 |
Q |
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| T |
31138899 |
ccttgctaaaaacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgaccttgatctacctttttaacatgagtctttctggt |
31138998 |
T |
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| Q |
109 |
tcaatccctgaatctgtcgaaaacttgattaatgtgaatgagcttgcacttgatcgcaatcgcctttctggaaccattccttccacaattggaaacttga |
208 |
Q |
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| T |
31138999 |
tcaatccctgaatctgtcgaaaacttgattaatgtgaatgagcttgcacttgatcgcaatcgcctttctggaaccattccttccacaattggaaacttga |
31139098 |
T |
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| Q |
209 |
aaaacctccaatatttgtttt |
229 |
Q |
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| T |
31139099 |
aaaacctccaatatttgtttt |
31139119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 31182620 - 31182830
Alignment:
| Q |
15 |
taataacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgaccttgatctacctttttaacatgagtctttctggttcaatc |
114 |
Q |
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| T |
31182620 |
taataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaacactatcttactttataacatgagtctttctggttcaatc |
31182719 |
T |
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| Q |
115 |
cctgaatctgtcgaaaacttgattaatgtgaatgagcttgcacttgatcgcaatcgcctttctggaaccattccttccacaattggaaacttgaaaaacc |
214 |
Q |
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| T |
31182720 |
cctgaatctgtcgaaaacttgattaatgtgaatgagcttgcacttgatcgcaatcgcctttctggaaccattccttccacaattggaaacttgaaaaatc |
31182819 |
T |
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| Q |
215 |
tccaatatttg |
225 |
Q |
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| T |
31182820 |
tccaatatttg |
31182830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 31101524 - 31101729
Alignment:
| Q |
11 |
ttgctaataacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgaccttgatctacctttttaacatgagtctttctggttc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31101524 |
ttgctaataacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgaccttgatctacctttataacatgagtctttctggttc |
31101623 |
T |
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| Q |
111 |
aatccctgaatctgtcgaaaacttgattaatgtgaatgagcttgcacttgatcgcaatcgcctttctggaaccattccttccacaattggaaacttgaaa |
210 |
Q |
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| T |
31101624 |
aatccctgattcagtacaaaacttgattaatttggatgtacttgcactttatatgaataacctttctggattcattccttccacaattggaaacttgaaa |
31101723 |
T |
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| Q |
211 |
aacctc |
216 |
Q |
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|||||| |
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| T |
31101724 |
aacctc |
31101729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 31057092 - 31057290
Alignment:
| Q |
14 |
ctaataacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgaccttgatctacctttttaacatgagtctttctggttcaat |
113 |
Q |
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|||||||||||||| ||| ||| |||||||| || ||||||||||||||||||||||||||| | ||||| || |||||| |||||||||||||||| |
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| T |
31057092 |
ctaataacaccaagatgtctggtccaattccacattccttgtggaacatgtctagcttgaccgtactctactttgataacataggtctttctggttcaat |
31057191 |
T |
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| Q |
114 |
ccctgaatctgtcgaaaacttgattaatgtgaatgagcttgcacttgatcgcaatcgcctttctggaaccattccttccacaattggaaacttgaaaaa |
212 |
Q |
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| T |
31057192 |
ccctgattccatacaaaacttggttaatttgaaggaacttgcacttgatatcaatcacctttctggatccattccttccactattggagacttgaaaaa |
31057290 |
T |
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