View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18524_high_7 (Length: 208)

Name: NF18524_high_7
Description: NF18524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18524_high_7
NF18524_high_7
[»] chr5 (2 HSPs)
chr5 (1-197)||(42562342-42562538)
chr5 (1-61)||(29712613-29712673)
[»] chr4 (17 HSPs)
chr4 (44-160)||(48898630-48898746)
chr4 (110-164)||(45384903-45384957)
chr4 (47-100)||(48891326-48891379)
chr4 (43-162)||(49041201-49041320)
chr4 (40-98)||(48170690-48170748)
chr4 (46-100)||(48852576-48852630)
chr4 (7-93)||(48875720-48875806)
chr4 (41-162)||(48863137-48863258)
chr4 (4-93)||(48870413-48870502)
chr4 (4-93)||(48886099-48886188)
chr4 (113-164)||(50250816-50250867)
chr4 (41-100)||(50250898-50250957)
chr4 (112-160)||(48870536-48870584)
chr4 (112-160)||(48886222-48886270)
chr4 (113-175)||(48170586-48170648)
chr4 (38-98)||(33133924-33133984)
chr4 (41-93)||(37827109-37827161)
[»] chr6 (1 HSPs)
chr6 (4-94)||(21015677-21015767)
[»] chr3 (2 HSPs)
chr3 (41-86)||(11015641-11015686)
chr3 (41-93)||(47452022-47452074)
[»] chr8 (2 HSPs)
chr8 (110-164)||(4031936-4031990)
chr8 (46-96)||(4032022-4032072)
[»] chr1 (1 HSPs)
chr1 (47-167)||(24352702-24352822)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 42562538 - 42562342
Alignment:
Q  1 tcgtgtagagggtttatacttttgcattctggtgcatgcttctacctatggaatccatccatcggacatcacaaacaaatacctttgtctcctattgatt 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42562538 tcgtgtagagggtttatacttttgcattgtggtgcatgcttctacctatggaatccatccatcggacatcacaaacaaatacctttgtctcctattgatt 42562439  T
Q  101 atatttttaatttatatggttttgggtatgatcactcaacaaatgattatttagtggtttcaatttcccgtgatcaaattccatactcagatgatgt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42562438 atatttttaatttatatggttttgggtatgatcactcaacaaatgattatttagtggtttcaatttcccgtgatcaaattccatactcagatgatgt 42562342  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 29712673 - 29712613
Alignment:
Q  1 tcgtgtagagggtttatacttttgcattctggtgcatgcttctacctatggaatccatcca 61  Q
    ||||||||||||||||||||||||  || |||| ||||  |||  ||||||||||||||||    
T  29712673 tcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatcca 29712613  T

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Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 44 - 160
Target Start/End: Original strand, 48898630 - 48898746
Alignment:
Q  44 acctatggaatccatccatcggacatcacaaacaaatacctttgtctcctattgattatatttttaatttatatggttttgggtatgatcactcaacaaa 143  Q
    |||||||||||||||||| ||||  |||||||||||||||||||||||||| | ||| |  |||  |||| |||||||||||||||||||| | |||| |    
T  48898630 acctatggaatccatccaccggagctcacaaacaaatacctttgtctcctaatcatttttctttatatttctatggttttgggtatgatcagttaacaga 48898729  T
Q  144 tgattatttagtggttt 160  Q
    |||||| ||||||||||    
T  48898730 tgattacttagtggttt 48898746  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 45384957 - 45384903
Alignment:
Q  110 atttatatggttttgggtatgatcactcaacaaatgattatttagtggtttcaat 164  Q
    |||| |||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  45384957 atttctatggttttgggtatgatcagtcaacaaatgattatttggtggtttcaat 45384903  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 48891326 - 48891379
Alignment:
Q  47 tatggaatccatccatcggacatcacaaacaaatacctttgtctcctattgatt 100  Q
    |||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  48891326 tatggaatccatccactggacttcacaaacaaatacctttgtctcctattgatt 48891379  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 49041320 - 49041201
Alignment:
Q  43 tacctatggaatccatccatcggacatcacaaacaaatacctttgtctcctattgattatatttttaatttatatggttttgggtatgatcactcaacaa 142  Q
    ||||||||||| ||||||| ||||  |||||||| |||||||||| |||||| | || ||   || ||||| |||||||||||||||||||  ||||||     
T  49041320 tacctatggaacccatccaccggagctcacaaactaatacctttgcctcctaatcatgattacttaaatttctatggttttgggtatgatccgtcaacag 49041221  T
Q  143 atgattatttagtggtttca 162  Q
    ||||||| ||  ||||||||    
T  49041220 atgattacttgatggtttca 49041201  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 48170748 - 48170690
Alignment:
Q  40 ttctacctatggaatccatccatcggacatcacaaacaaatacctttgtctcctattga 98  Q
    |||||||||||||||||||||| | ||  ||| ||||||||||||||||||||||||||    
T  48170748 ttctacctatggaatccatccacccgagttcataaacaaatacctttgtctcctattga 48170690  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 48852576 - 48852630
Alignment:
Q  46 ctatggaatccatccatcggacatcacaaacaaatacctttgtctcctattgatt 100  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||| |||||||    
T  48852576 ctatggaatccatccaccggagttcacaaacaaatacctttgtctcccattgatt 48852630  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 48875720 - 48875806
Alignment:
Q  7 agagggtttatacttttgcattctggtgcatgcttctacctatggaatccatccatcggacatcacaaacaaatacctttgtctcct 93  Q
    ||||| |||||||| ||||||| |  | || || ||||||||||||||||||||| ||||  |||||||||||||||| ||||||||    
T  48875720 agaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccaccggatttcacaaacaaatacctatgtctcct 48875806  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 48863137 - 48863258
Alignment:
Q  41 tctacctatggaatccatccatcggacatcacaaacaaatacctttgtctcctattgattatatttttaatttatatggttttgggtatgatcactcaac 140  Q
    ||||||||||||||||||||| ||||  ||| ||||||||||||| | |||||| |||||||  ||| |||||    ||||||||||||||||  |||      
T  48863137 tctacctatggaatccatccaccggagctcagaaacaaataccttcgcctcctaatgattattatttaaatttcgccggttttgggtatgatccgtcaga 48863236  T
Q  141 aaatgattatttagtggtttca 162  Q
    | ||||||| || |||||||||    
T  48863237 agatgattacttggtggtttca 48863258  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 48870413 - 48870502
Alignment:
Q  4 tgtagagggtttatacttttgcattctggtgcatgcttctacctatggaatccatccatcggacatcacaaacaaatacctttgtctcct 93  Q
    |||||||| |||||| | ||||||| || | ||  | ||||||||||||||||||||| ||||  |||||||||||||||||||| ||||    
T  48870413 tgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacctttgtgtcct 48870502  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 48886099 - 48886188
Alignment:
Q  4 tgtagagggtttatacttttgcattctggtgcatgcttctacctatggaatccatccatcggacatcacaaacaaatacctttgtctcct 93  Q
    |||||||| |||||| | ||||||| || | ||  | ||||||||||||||||||||| ||||  |||||||||||||||||||| ||||    
T  48886099 tgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacctttgtgtcct 48886188  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 50250867 - 50250816
Alignment:
Q  113 tatatggttttgggtatgatcactcaacaaatgattatttagtggtttcaat 164  Q
    ||||||||||||| ||||| ||||||||| |||||||||| |||||||||||    
T  50250867 tatatggttttggttatgaccactcaacagatgattatttggtggtttcaat 50250816  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 50250957 - 50250898
Alignment:
Q  41 tctacctatggaatccatccatcggacatcacaaacaaatacctttgtctcctattgatt 100  Q
    ||||||||||||||||||||| ||| | ||||| ||||||||||||||||| | ||||||    
T  50250957 tctacctatggaatccatccaccgggcttcacatacaaatacctttgtctcattttgatt 50250898  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 48870536 - 48870584
Alignment:
Q  112 ttatatggttttgggtatgatcactcaacaaatgattatttagtggttt 160  Q
    ||||||||||||||||||||||| | |||| ||||||| ||||||||||    
T  48870536 ttatatggttttgggtatgatcagttaacagatgattacttagtggttt 48870584  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 48886222 - 48886270
Alignment:
Q  112 ttatatggttttgggtatgatcactcaacaaatgattatttagtggttt 160  Q
    ||||||||||||||||||||||| | |||| ||||||| ||||||||||    
T  48886222 ttatatggttttgggtatgatcagttaacagatgattacttagtggttt 48886270  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 48170648 - 48170586
Alignment:
Q  113 tatatggttttgggtatgatcactcaacaaatgattatttagtggtttcaatttcccgtgatc 175  Q
    |||||||||||||||||||||| | || | ||||||| |||||||||||| | ||| ||||||    
T  48170648 tatatggttttgggtatgatcagttaagagatgattacttagtggtttcagtgtcctgtgatc 48170586  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 33133984 - 33133924
Alignment:
Q  38 gcttctacctatggaatccatccatcggacatcacaaacaaatacctttgtctcctattga 98  Q
    ||||| ||||||||||||||| || | ||  ||| |||||||||||||||||||| |||||    
T  33133984 gcttccacctatggaatccattcacccgagttcataaacaaatacctttgtctccaattga 33133924  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 37827161 - 37827109
Alignment:
Q  41 tctacctatggaatccatccatcggacatcacaaacaaatacctttgtctcct 93  Q
    ||||| |||||||||||||||  |||  ||||||||||||||| |||||||||    
T  37827161 tctacatatggaatccatccactggatttcacaaacaaatacccttgtctcct 37827109  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 21015677 - 21015767
Alignment:
Q  4 tgtagagggtttatacttttgcattctggtgcatgcttctacctatggaatccatccatcggacatcacaaacaaatacctttgtctccta 94  Q
    ||||||||||||||| |||||||   || | ||  | |||||||||||||||||||||   ||  ||||||||||||||||||||||||||    
T  21015677 tgtagagggtttatatttttgcaccatgattcaaacatctacctatggaatccatccactagagttcacaaacaaatacctttgtctccta 21015767  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 11015686 - 11015641
Alignment:
Q  41 tctacctatggaatccatccatcggacatcacaaacaaataccttt 86  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||    
T  11015686 tctacctatggaatccatcaactggacatcacaaacaaataccttt 11015641  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 47452074 - 47452022
Alignment:
Q  41 tctacctatggaatccatccatcggacatcacaaacaaatacctttgtctcct 93  Q
    ||||| |||||||||||||||  |||  ||||||||||||||||||| |||||    
T  47452074 tctacatatggaatccatccactggagttcacaaacaaatacctttgcctcct 47452022  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 4031990 - 4031936
Alignment:
Q  110 atttatatggttttgggtatgatcactcaacaaatgattatttagtggtttcaat 164  Q
    |||||||||||||||||||||| || ||||||||||| ||  | |||||||||||    
T  4031990 atttatatggttttgggtatgaccagtcaacaaatgactacctggtggtttcaat 4031936  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 4032072 - 4032022
Alignment:
Q  46 ctatggaatccatccatcggacatcacaaacaaatacctttgtctcctatt 96  Q
    ||||||||| ||||||| |||  |||||||||||||||||| |||||||||    
T  4032072 ctatggaattcatccattggagttcacaaacaaatacctttatctcctatt 4032022  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 167
Target Start/End: Original strand, 24352702 - 24352822
Alignment:
Q  47 tatggaatccatccatcggacatcacaaacaaatacctttgtctcctattgattatatttttaatttatatggttttgggtatgatcactcaacaaatga 146  Q
    ||||||||||||||| ||||  ||  | ||||||||||||  |||||| || ||  | ||| | ||| |||||||||||||||||  | |||||| ||||    
T  24352702 tatggaatccatccaccggatttcttagacaaatacctttccctcctaatgtttcaaatttaattttttatggttttgggtatgacgaatcaacatatga 24352801  T
Q  147 ttatttagtggtttcaatttc 167  Q
    ||| || ||||||||| ||||    
T  24352802 ttacttggtggtttcagtttc 24352822  T

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