View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18524_low_5 (Length: 248)
Name: NF18524_low_5
Description: NF18524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18524_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 31321947 - 31321730
Alignment:
| Q |
15 |
aagaatatctacaatcctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaa |
114 |
Q |
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| T |
31321947 |
aagaaaatctacaatcctatttgaaatacaaaatgcagttgattgaatagtgatcataggattaacaccaacagcagttggaagaacactagcatcacaa |
31321848 |
T |
|
| Q |
115 |
acaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321847 |
acaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaag |
31321748 |
T |
|
| Q |
215 |
tatacaaattccaattct |
232 |
Q |
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|||||||||||||||||| |
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| T |
31321747 |
tatacaaattccaattct |
31321730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 31334200 - 31333983
Alignment:
| Q |
15 |
aagaatatctacaatcctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaa |
114 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31334200 |
aagaaaatctacaatcctatttgaaatacaaaatgcagttgattgaatagtgatcataggattaacaccaacagcagttggaagaacactagcatcacaa |
31334101 |
T |
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| Q |
115 |
acaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31334100 |
acaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaag |
31334001 |
T |
|
| Q |
215 |
tatacaaattccaattct |
232 |
Q |
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|||||||||||||||||| |
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| T |
31334000 |
tatacaaattccaattct |
31333983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 31334737 - 31334769
Alignment:
| Q |
201 |
ttgatgagcagaagtatacaaattccaattctt |
233 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
31334737 |
ttgatgagtagaagtatacaaattccaattctt |
31334769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 213
Target Start/End: Complemental strand, 39110562 - 39110404
Alignment:
| Q |
55 |
gattgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcat |
154 |
Q |
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|||||||| || | |||||| ||||||||||| ||| | || | |||||| ||||||| ||| ||||||||| ||||||||||| || ||||| |||| |
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| T |
39110562 |
gattgaatggttaccatagggttaacaccaactgcactaggcaaaacacttccatcacacacatacaacccttttgcttcccaactttctccattctcat |
39110463 |
T |
|
| Q |
155 |
caacagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaa |
213 |
Q |
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|||| ||||| || | ||||||| |||||||||||||| ||||||||||| |||||| |
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| T |
39110462 |
caactgcaccctcttcttcattcttacccattctacaacttcccatttgatgtgcagaa |
39110404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 33521062 - 33521232
Alignment:
| Q |
58 |
tgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcatcaa |
157 |
Q |
| |
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|||||||| ||||| ||||| | ||| | |||||||||| | ||| |||||||| ||||| | ||||||||||||||| ||| ||||||||||||| |
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| T |
33521062 |
tgaatagttatcatgggattgatacctatggcagttggaaacaaacttgcatcacacacaaatagtccttcagcttcccaattctgtccattttcatcaa |
33521161 |
T |
|
| Q |
158 |
cagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaagtatacaaattccaa |
228 |
Q |
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| T |
33521162 |
ccgtgccttccttatcagtgattcctatcctacaactccccatctggtgagcagatgcatacatattccaa |
33521232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 10926339 - 10926283
Alignment:
| Q |
31 |
ctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacaccaaca |
87 |
Q |
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||||||||||||||||||||||||||||||||||| || | ||||||||||| |||| |
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| T |
10926339 |
ctatttgaaatacaaaatgcagttgattgaatagttattagaggattaacactaaca |
10926283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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