View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18524_low_7 (Length: 211)
Name: NF18524_low_7
Description: NF18524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18524_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 41900281 - 41900245
Alignment:
| Q |
156 |
tctgcatcactacccctttcttacatctacaagtccc |
192 |
Q |
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| T |
41900281 |
tctgcatcactacccctttcttacatctacaagtccc |
41900245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 41900381 - 41900345
Alignment:
| Q |
56 |
tccttctccttcacttcctccaccatatgtctacaaa |
92 |
Q |
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| T |
41900381 |
tccttctccttcacttcctccaccatatgtctacaaa |
41900345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 41900473 - 41900437
Alignment:
| Q |
156 |
tctgcatcactacccctttcttacatctacaagtccc |
192 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
41900473 |
tctgcatcactacccctttcttacatctacaagtccc |
41900437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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