View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18525_low_1 (Length: 472)

Name: NF18525_low_1
Description: NF18525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18525_low_1
NF18525_low_1
[»] chr7 (6 HSPs)
chr7 (124-391)||(37616791-37617058)
chr7 (124-391)||(36828789-36829055)
chr7 (129-391)||(4554599-4554860)
chr7 (161-392)||(43282626-43282867)
chr7 (161-392)||(4968054-4968295)
chr7 (227-287)||(18713225-18713286)
[»] scaffold0044 (1 HSPs)
scaffold0044 (124-392)||(82908-83175)
[»] chr1 (8 HSPs)
chr1 (124-322)||(8113781-8113979)
chr1 (164-392)||(24765187-24765425)
chr1 (158-391)||(47974937-47975169)
chr1 (236-344)||(125287-125395)
chr1 (297-392)||(23894594-23894689)
chr1 (392-469)||(17204238-17204315)
chr1 (298-392)||(20010627-20010720)
chr1 (227-317)||(325836-325927)
[»] chr8 (2 HSPs)
chr8 (158-391)||(10289536-10289768)
chr8 (158-392)||(43266163-43266396)
[»] chr5 (3 HSPs)
chr5 (166-397)||(35228096-35228327)
chr5 (158-391)||(33672107-33672340)
chr5 (297-355)||(21286137-21286195)
[»] chr3 (5 HSPs)
chr3 (161-392)||(48663877-48664107)
chr3 (161-391)||(4100582-4100822)
chr3 (158-287)||(28160504-28160633)
chr3 (235-392)||(2994027-2994173)
chr3 (227-349)||(16900498-16900621)
[»] chr2 (6 HSPs)
chr2 (158-392)||(1658622-1658855)
chr2 (270-391)||(22710217-22710338)
chr2 (392-465)||(25287372-25287445)
chr2 (274-392)||(38432071-38432187)
chr2 (235-280)||(8148784-8148829)
chr2 (235-280)||(8153408-8153453)
[»] chr4 (1 HSPs)
chr4 (227-317)||(11057097-11057188)
[»] chr6 (1 HSPs)
chr6 (227-317)||(5319534-5319625)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 124 - 391
Target Start/End: Complemental strand, 37617058 - 37616791
Alignment:
Q  124 tgtgttctacgatggaatggatgaaagaaaacaaggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttg 223  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37617058 tgtgttctacgatggaatggatgaaagaaaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcg 37616959  T
Q  224 tttcgacccgaaaaagcggacgatttgacccgctaccgctccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggt 323  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||| |||| |||||||||||    
T  37616958 tttcgacccggaaaagtgggcgatttgacccgctaccgctccacgtaaagcggccgcgaaacccggttttggaccgcttttccctaacacgcgatgcggt 37616859  T
Q  324 cgcgttctaacgcgctaggctattttcagccgtgatcgcaccgcgttaggccgctattgacaacagag 391  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||    
T  37616858 cgcgttctaacgcgctaggctgttttcagccgcgatcgcgccgcgttaggccgctattgacaacagag 37616791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 124 - 391
Target Start/End: Original strand, 36828789 - 36829055
Alignment:
Q  124 tgtgttctacgatggaatggatgaaagaaaacaaggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttg 223  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36828789 tgtgttctacgatggaatggatgaaagaaaataggactttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcg 36828888  T
Q  224 tttcgacccgaaaaagcggacgatttgacccgctaccgctccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggt 323  Q
    || ||||| | |||||||| ||||||||||||||||||||||| ||||||||||||| ||||||  ||||||||||||||||| ||||||||||||||||    
T  36828889 tt-cgacctggaaaagcgggcgatttgacccgctaccgctccatgtaaagcggccgcgaaacccggttttggaccgcttttccctaacgcgcgatgcggt 36828987  T
Q  324 cgcgttctaacgcgctaggctattttcagccgtgatcgcaccgcgttaggccgctattgacaacagag 391  Q
    |||| |||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||    
T  36828988 cgcgatctaacgcgctaggctgttttcagccgcgatcgcgccgcgttaggccgctattgacaacagag 36829055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 129 - 391
Target Start/End: Original strand, 4554599 - 4554860
Alignment:
Q  129 tctacgatggaatggatgaaagaaaacaaggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcg 228  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||    
T  4554599 tctacgatggaatggatgaaagaaaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataattccataatttcgtttcg 4554698  T
Q  229 acccgaaaaagcggacgatttgacccgctaccgctccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgt 328  Q
    | ||| ||||||||  |||||||||||||||| ||||| ||||||||||||| ||||||  |||||  |||||||| | ||||||||||  |||||||||    
T  4554699 aaccggaaaagcgggtgatttgacccgctaccactccatgtaaagcggccgcgaaacccggttttgttccgcttttgcctaacgcgcgactcggtcgcgt 4554798  T
Q  329 tctaacgcgctaggctattttcagccgtgatcgcaccgcgttaggccgctattgacaacagag 391  Q
    ||| ||| |||||||| |||||||||| |||||| |||| || |  |||||||||||||||||    
T  4554799 tctgacg-gctaggctgttttcagccgcgatcgcgccgcatttgaacgctattgacaacagag 4554860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 161 - 392
Target Start/End: Complemental strand, 43282867 - 43282626
Alignment:
Q  161 tttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctacc 260  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||| | ||||||||| ||| |||     || |||||||| ||    
T  43282867 tttgaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcgttagacccgctccc 43282768  T
Q  261 gctccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttca--------- 351  Q
    |||||||| ||||| ||||| ||||||  ||||   |||||||| | |||||||||||||||||||||||| |||||||||||| ||||||             
T  43282767 gctccacgaaaagcagccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgttttcagccgctccg 43282668  T
Q  352 -gccgtgatcgcaccgcgttaggccgctattgacaacagagg 392  Q
     |||| |||||| |||||||||||||||||||||||||||||    
T  43282667 cgccgcgatcgcgccgcgttaggccgctattgacaacagagg 43282626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 161 - 392
Target Start/End: Complemental strand, 4968295 - 4968054
Alignment:
Q  161 tttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctacc 260  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||| | ||||||||| ||| |||     || |||||||| |     
T  4968295 tttgaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcgttagacccgctcca 4968196  T
Q  261 gctccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttca--------- 351  Q
    |||||||| ||||||||||| ||||||  ||||   |||||||| | |||||||||||||||||||||||| | |||||||||| ||||||             
T  4968195 gctccacgaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgatgcgctaggctgttttcagccgctccg 4968096  T
Q  352 -gccgtgatcgcaccgcgttaggccgctattgacaacagagg 392  Q
     |||| |||||| |||||||||||||||||||||||||||||    
T  4968095 cgccgcgatcgcgccgcgttaggccgctattgacaacagagg 4968054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 18713225 - 18713286
Alignment:
Q  227 cgacccgaaaaagcggacgatttgacccgctaccgctccacgtaaa-gcggccgcaaaaccc 287  Q
    ||||||| |||||||| |||||||||||||| |||||||| ||||| |||||||| ||||||    
T  18713225 cgacccggaaaagcgggcgatttgacccgctcccgctccaggtaaaggcggccgcgaaaccc 18713286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 124 - 392
Target Start/End: Complemental strand, 83175 - 82908
Alignment:
Q  124 tgtgttctacgatggaatggatgaaagaaaacaaggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttg 223  Q
    ||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  83175 tgtgttctacgatggaatggatgaaagaaaatagggttttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgttatttcg 83076  T
Q  224 tttcgacccgaaaaagcggacgatttgacccgctaccgctccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggt 323  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||||  ||||||||||||||||| |||||||||||| |||    
T  83075 tttcgacccggaaaagcgggcgatttgacccgctaccgctccacgtaaagcgcccgcgaaacccggttttggaccgcttttccctaacgcgcgatgtggt 82976  T
Q  324 cgcgttctaacgcgctaggctattttcagccgtgatcgcaccgcgttaggccgctattgacaacagagg 392  Q
    ||||||||||||||||||||| ||||| ||||    ||  ||||||||||||||||||||||| |||||    
T  82975 cgcgttctaacgcgctaggctgttttccgccg-ctccgagccgcgttaggccgctattgacaaaagagg 82908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 124 - 322
Target Start/End: Complemental strand, 8113979 - 8113781
Alignment:
Q  124 tgtgttctacgatggaatggatgaaagaaaacaaggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttg 223  Q
    |||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8113979 tgtgttctacaatggaatggatgaaagaaaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcg 8113880  T
Q  224 tttcgacccgaaaaagcggacgatttgacccgctaccgctccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcgg 322  Q
    |||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| |||||| |||||||||||||||    
T  8113879 tttcgatccggaaaagcgggcgatttgacccgctaccgctccatgtaaagcggccgcgaaacccagttttggaccgtttttccctaacgcgcgatgcgg 8113781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 164 - 392
Target Start/End: Complemental strand, 24765425 - 24765187
Alignment:
Q  164 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgct 263  Q
    |||||| |||||||||||||| |||| || |||||||||||||  ||||||||||||||   |||||||| |||||||| ||||||||||||||||||||    
T  24765425 gaaaattacaaaattaaccctactaatgtcacttaagtgaggggcaatttcgtaatttttggtcgacccggaaaagcgggcgatttgacccgctaccgct 24765326  T
Q  264 ccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttca----------gc 353  Q
    ||| | ||||||||| | ||| ||  ||| || |||||||| | ||||||||| ||||||||||||||||||||||||||| ||||||          ||    
T  24765325 ccaggaaaagcggccacgaaaaccggtttaggtccgcttttgcctaacgcgcgttgcggtcgcgttctaacgcgctaggctgttttcagccgctccgcgc 24765226  T
Q  354 cgtgatcgcaccgcgttaggccgctattgacaacagagg 392  Q
    || |||||| |||||||||||||||||||||||||||||    
T  24765225 cgcgatcgcgccgcgttaggccgctattgacaacagagg 24765187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 158 - 391
Target Start/End: Original strand, 47974937 - 47975169
Alignment:
Q  158 ggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgct 257  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||| | ||||||||| ||| |||     || ||||||||    
T  47974937 ggctttgaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcgttagacccgct 47975036  T
Q  258 accgctccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtg 357  Q
     |||||||||| ||||||||||| ||||||  ||||   |||||||| | |||||||||||||||||||||||| |||||||||||| ||||||||||      
T  47975037 cccgctccacgaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgttttcagccg-c 47975135  T
Q  358 atcgcaccgcgttaggccgctattgacaacagag 391  Q
      ||| ||||||||||||||||||||||||||||    
T  47975136 tccgcgccgcgttaggccgctattgacaacagag 47975169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 236 - 344
Target Start/End: Complemental strand, 125395 - 125287
Alignment:
Q  236 aaagcggacgatttgacccgctaccgctccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacg 335  Q
    ||||||| || |||||||||||||||||||| ||||||||||||| ||||||  |||||  |||||||| | |||||| |||  |||||| ||||| |||    
T  125395 aaagcggccgctttgacccgctaccgctccatgtaaagcggccgcgaaacccggttttgttccgcttttgcctaacgcacgactcggtcgagttctgacg 125296  T
Q  336 cgctaggct 344  Q
    |||||||||    
T  125295 cgctaggct 125287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 392
Target Start/End: Original strand, 23894594 - 23894689
Alignment:
Q  297 ccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgcaccgcgttaggccgctattgacaacagagg 392  Q
    |||||||| | ||||||| ||  | |||||||||| |||||||||||| |||||||||| |||||| || | ||||||||||||||||||||||||    
T  23894594 ccgcttttgcctaacgcgtgactcagtcgcgttctgacgcgctaggctgttttcagccgcgatcgcgccacattaggccgctattgacaacagagg 23894689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 392 - 469
Target Start/End: Complemental strand, 17204315 - 17204238
Alignment:
Q  392 ggtgtaacgtgccccttgtcaaaagcttcagcgattatcttctcagtcatagtcatggttgtcttcacctaaaaatcc 469  Q
    |||||||| |||||||| ||| ||||||  || ||||||||||||||||||||||| | |||||||||||||||||||    
T  17204315 ggtgtaacatgccccttctcagaagctttcgccattatcttctcagtcatagtcatagctgtcttcacctaaaaatcc 17204238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 392
Target Start/End: Original strand, 20010627 - 20010720
Alignment:
Q  298 cgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgcaccgcgttaggccgctattgacaacagagg 392  Q
    ||||||| | ||||||||||  ||||||||||||||||||||||||| ||||||||||    ||| ||||||||| |||| ||||||||||||||    
T  20010627 cgcttttgcctaacgcgcgactcggtcgcgttctaacgcgctaggctgttttcagccg-ctccgcgccgcgttagcccgcaattgacaacagagg 20010720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 325836 - 325927
Alignment:
Q  227 cgacccgaaaaagcggacgatttgacccgctaccgctccacgtaaa-gcggccgcaaaacccaattttggaccgcttttccataacgcgcga 317  Q
    ||||||| |||||| | |||||||||||||| |||||||| ||||| |||||||| ||||||  | |||  |||||||||| ||||||||||    
T  325836 cgacccggaaaagcaggcgatttgacccgctcccgctccaggtaaaggcggccgcgaaacccgctattgacccgcttttccctaacgcgcga 325927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 158 - 391
Target Start/End: Complemental strand, 10289768 - 10289536
Alignment:
Q  158 ggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgct 257  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  10289768 ggctttgaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattttgtaattttgtttcgacccggaaaagcgggcgatttgacccgct 10289669  T
Q  258 accgctccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtg 357  Q
     |||||||| | ||||||||||||||||||  ||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||||| |||      
T  10289668 cccgctccatgaaaagcggccgcaaaacccggtttaggaccgcttttgcctaacgcgcgttgcggtcgcgttctaacgcgctaggctgttttcaaccg-c 10289570  T
Q  358 atcgcaccgcgttaggccgctattgacaacagag 391  Q
      ||| ||| ||||| ||||||||||||||||||    
T  10289569 tccgcgccgtgttagaccgctattgacaacagag 10289536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 158 - 392
Target Start/End: Original strand, 43266163 - 43266396
Alignment:
Q  158 ggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgct 257  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||| | ||||||||||||| |||     || ||||| ||    
T  43266163 ggctttgaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccgaaaacgcgccgcgttagacccact 43266262  T
Q  258 accgctccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtg 357  Q
     |||||||||| ||||||||||| ||||||  ||||   |||||||| | |||||||||||||||||| ||||| |||||||||||| ||||||||||      
T  43266263 cccgctccacgaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgtgttctgacgcgctaggctgttttcagccg-c 43266361  T
Q  358 atcgcaccgcgttaggccgctattgacaacagagg 392  Q
      ||| |||||||||||||||||||||||||||||    
T  43266362 tccgcgccgcgttaggccgctattgacaacagagg 43266396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 8e-59; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 166 - 397
Target Start/End: Original strand, 35228096 - 35228327
Alignment:
Q  166 aaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgctcc 265  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| |||||||| ||| |||||| |||||||||||    
T  35228096 aaatgacaaaattaacccttctaacgttacataagtgagggataattccgtaatttcgtttcgacccggaaaagcgggcgacttgaccagctaccgctcc 35228195  T
Q  266 acgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgcacc 365  Q
    | |||||||||| || ||||||  |||||  |||||||| | ||| ||||||  || ||||||||| |||||||||||| |||||||||| |||||| ||    
T  35228196 atgtaaagcggctgcgaaacccggttttgttccgcttttgcttaatgcgcgactcgatcgcgttctgacgcgctaggctgttttcagccgcgatcgcgcc 35228295  T
Q  366 gcgttaggccgctattgacaacagagggtgta 397  Q
    ||||| |  ||||||||||||| |||| ||||    
T  35228296 gcgtttgatcgctattgacaacggaggttgta 35228327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 158 - 391
Target Start/End: Complemental strand, 33672340 - 33672107
Alignment:
Q  158 ggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgct 257  Q
    |||||||||||| ||||||||||||||||||| || ||||| ||||||| |||||  ||||||| | ||| ||||| ||| |||     || ||||| ||    
T  33672340 ggctttgaaaattacaaaattaacccttctaatgtcactta-gtgaggggtaattatgtaatttcgcttcaacccggaaacgcgccgcgttagacccact 33672242  T
Q  258 accgctcca-cgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgt 356  Q
     |||||| | |  ||||||||||| ||||||  ||||   |||||||| | |||||||||||||||||||||||| |||||||||||| |||||||| |     
T  33672241 cccgctctaacaaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgttttcagcagc 33672142  T
Q  357 gatcgcaccgcgttaggccgctattgacaacagag 391  Q
    |||||| |||||||||||||||| |||||||||||    
T  33672141 gatcgcgccgcgttaggccgctactgacaacagag 33672107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 21286137 - 21286195
Alignment:
Q  297 ccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccg 355  Q
    |||||||| | ||||||||||  |||||||||| | |||||||||||| ||||||||||    
T  21286137 ccgcttttgcctaacgcgcgactcggtcgcgttttgacgcgctaggctgttttcagccg 21286195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 161 - 392
Target Start/End: Original strand, 48663877 - 48664107
Alignment:
Q  161 tttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctacc 260  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||| | ||||||||| ||| |||     || |||||||| ||    
T  48663877 tttgaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcgttagacccgctccc 48663976  T
Q  261 gctccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatc 360  Q
    |||||||| ||||||||||| ||||||  ||||   |||||||| | |||||||||||||||||||||||| |||||||||||| ||||||||||   ||    
T  48663977 gctccacgaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgttttcagccg-cttc 48664075  T
Q  361 gcaccgcgttaggccgctattgacaacagagg 392  Q
    || |||||||||||||||||||||||||||||    
T  48664076 gcgccgcgttaggccgctattgacaacagagg 48664107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 161 - 391
Target Start/End: Complemental strand, 4100822 - 4100582
Alignment:
Q  161 tttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctacc 260  Q
    ||||||||| |||||||||| |||||||| || ||||||||||||| |||||  ||||||| | ||||||||| ||| |||     || |||||||| ||    
T  4100822 tttgaaaattacaaaattaaaccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcgttagacccgctccc 4100723  T
Q  261 gctccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttca--------- 351  Q
    |||||||| ||||||||||| ||||||  ||||   | |||||| | |||||||||||||||||||||||| |||||||||||| ||||||             
T  4100722 gctccacgaaaagcggccgcgaaacccggttttcagctgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgttttcagccgctccg 4100623  T
Q  352 -gccgtgatcgcaccgcgttaggccgctattgacaacagag 391  Q
     |||| |||||| ||||||||||||||||||||||||||||    
T  4100622 cgccgcgatcgcgccgcgttaggccgctattgacaacagag 4100582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 158 - 287
Target Start/End: Complemental strand, 28160633 - 28160504
Alignment:
Q  158 ggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgct 257  Q
    |||||||||||| |||||||||||| |||||| || ||||||||||||| |||||  ||||||| | ||||||||| ||| | |      | ||||||||    
T  28160633 ggctttgaaaattacaaaattaacctttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgtgccgcgctagacccgct 28160534  T
Q  258 accgctccacgtaaagcggccgcaaaaccc 287  Q
     |||||||||| ||||||||||||||||||    
T  28160533 cccgctccacgaaaagcggccgcaaaaccc 28160504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 235 - 392
Target Start/End: Original strand, 2994027 - 2994173
Alignment:
Q  235 aaaagcggacgatttgacccgctaccgctccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaac 334  Q
    |||||| | |||||||||||||||||  |||| ||||||||||||| |||||||           ||||||| |||| || ||  |||||||| ||| ||    
T  2994027 aaaagctggcgatttgacccgctaccaatccatgtaaagcggccgcgaaaccca-----------cttttccctaacacgtgactcggtcgcgctctgac 2994115  T
Q  335 gcgctaggctattttcagccgtgatcgcaccgcgttaggccgctattgacaacagagg 392  Q
    |||||||||| ||||| |||| ||| || ||||||| |||||||||||||||||||||    
T  2994116 gcgctaggctgttttcggccgcgattgcgccgcgtttggccgctattgacaacagagg 2994173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 349
Target Start/End: Original strand, 16900498 - 16900621
Alignment:
Q  227 cgacccgaaaaagcggacgatttgacccgctaccgctccacgtaaa-gcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcg 325  Q
    ||||||| |||||||| |||||||||||||| |||||||| ||||| | |||||||||||||  | |||  || ||||||| |||| |||||  |||| |    
T  16900498 cgacccggaaaagcgggcgatttgacccgctcccgctccaagtaaaggtggccgcaaaacccgctattgacccacttttccctaacacgcgaatcggtag 16900597  T
Q  326 cgttctaacgcgctaggctatttt 349  Q
    || ||| ||||| |||||| ||||    
T  16900598 cgctctgacgcggtaggctgtttt 16900621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 158 - 392
Target Start/End: Complemental strand, 1658855 - 1658622
Alignment:
Q  158 ggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgct 257  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||| | ||||||||| ||| |||     || ||||||||    
T  1658855 ggctttgaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcgttagacccgct 1658756  T
Q  258 accgctccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtg 357  Q
     |||||||||| ||||||||||| ||||||  ||||   |||||||| | |||||||||||||||||||||||| |||||||||||| ||||||||||      
T  1658755 cccgctccacgaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgttttcagccg-c 1658657  T
Q  358 atcgcaccgcgttaggccgctattgacaacagagg 392  Q
      ||| |||||||||||||||||||||||||||||    
T  1658656 tccgcgccgcgttaggccgctattgacaacagagg 1658622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 391
Target Start/End: Complemental strand, 22710338 - 22710217
Alignment:
Q  270 aaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgcaccgcgt 369  Q
    ||||||||||| ||||||  |||| | ||||| || | ||||||||| |||||||||||||| |||||||||||| |||||||||| |||||  ||||||    
T  22710338 aaagcggccgcgaaacccggttttcgcccgctattgcctaacgcgcgttgcggtcgcgttctgacgcgctaggctgttttcagccgcgatcgtgccgcgt 22710239  T
Q  370 taggccgctattgacaacagag 391  Q
    || |||||||||||||||||||    
T  22710238 taagccgctattgacaacagag 22710217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 392 - 465
Target Start/End: Original strand, 25287372 - 25287445
Alignment:
Q  392 ggtgtaacgtgccccttgtcaaaagcttcagcgattatcttctcagtcatagtcatggttgtcttcacctaaaa 465  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||    
T  25287372 ggtgtaacgtgccccttgtcaaaagctttagccattatcttctcagtcataatcatggttgtcttcacctaaaa 25287445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 38432187 - 38432071
Alignment:
Q  274 cggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgcaccgcgttagg 373  Q
    ||||||| ||||||  |||||  ||||||||   ||||||||||  |||||||||||| |||||||||||| ||||||||||    ||| |||||||||     
T  38432187 cggccgcgaaaccccgttttgttccgcttttgtctaacgcgcgactcggtcgcgttctgacgcgctaggctgttttcagccg-ctccgcgccgcgttagc 38432089  T
Q  374 ccgctattgacaacagagg 392  Q
    ||| |||||||||||||||    
T  38432088 ccg-tattgacaacagagg 38432071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 8148829 - 8148784
Alignment:
Q  235 aaaagcggacgatttgacccgctaccgctccacgtaaagcggccgc 280  Q
    ||||| || ||||||||||||||||||||||| |||||||||||||    
T  8148829 aaaagtgggcgatttgacccgctaccgctccatgtaaagcggccgc 8148784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 8153453 - 8153408
Alignment:
Q  235 aaaagcggacgatttgacccgctaccgctccacgtaaagcggccgc 280  Q
    ||||| || ||||||||||||||||||||||| |||||||||||||    
T  8153453 aaaagtgggcgatttgacccgctaccgctccatgtaaagcggccgc 8153408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 11057097 - 11057188
Alignment:
Q  227 cgacccgaaaaagcggacgatttgacccgctaccgctccacgtaaa-gcggccgcaaaacccaattttggaccgcttttccataacgcgcga 317  Q
    ||||||| |||||||| |||||||||||||| |||||||| |||||  ||||||| ||||||  | |||  |||||||||| ||||||||||    
T  11057097 cgacccggaaaagcgggcgatttgacccgctcccgctccaggtaaacccggccgcgaaacccgctattgacccgcttttccctaacgcgcga 11057188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 5319625 - 5319534
Alignment:
Q  227 cgacccgaaaaagcggacgatttgacccgctaccgctccacgtaaa-gcggccgcaaaacccaattttggaccgcttttccataacgcgcga 317  Q
    ||||||| |||||| | |||||||||||||| |||||||| ||||| |||||||| ||||||  | | |  |||||||||| ||||||||||    
T  5319625 cgacccggaaaagctggcgatttgacccgctcccgctccaggtaaaggcggccgcgaaacccgctatggacccgcttttccctaacgcgcga 5319534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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