View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18525_low_2 (Length: 364)
Name: NF18525_low_2
Description: NF18525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18525_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 25287840 - 25287537
Alignment:
| Q |
20 |
acttgaagaacaagaaaaagttacacaagcttctaaaccacaggttctaccatgctctttgattgcacaattatgattgtacatgtacaattttgcgtta |
119 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |
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| T |
25287840 |
acttgaagaacaagaaaaagatacacaagcttctaaaccacaggttctaccatgctctttgattgaacaattataattgtacatgtacaattctgcgtta |
25287741 |
T |
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| Q |
120 |
atgatttcataatcatacactaagcactaaaataatcttttatgtgcattagaaagtgacatgcatgacttgatatgaaagaattgcagtttttgctatt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25287740 |
atgatttcataatcatacactaagcactaaaataatcatttatgtgcattagaaagtgacatgcatgacttgatatgaaagaattgcagtttttgctatt |
25287641 |
T |
|
| Q |
220 |
tccagctattatgttacgttaaccgttaaacatacatttttagtgttttc--nnnnnnnnggaaggtcacctatgagattaggtgtttcttcgttttgtt |
317 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25287640 |
tccagctattatgttacgttaactgttaaacatacatttttagtgttttcttttttttttggaaggtcacctatgagattaggtgtttcttcgttttgtt |
25287541 |
T |
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| Q |
318 |
tatt |
321 |
Q |
| |
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|||| |
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| T |
25287540 |
tatt |
25287537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 34813904 - 34813720
Alignment:
| Q |
20 |
acttgaagaacaagaaaaagttacacaagcttctaaaccacaggttctaccatgctctttgattgcacaattatgattgtacatgtacaattttgcgtta |
119 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||| | |||| ||||| ||||||| | ||||| ||| |||||| |||| |
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| T |
34813904 |
acttgaggaacaagaaaaagttacagaagcttctaaaccacaggttctaccatgttgtttggttgcaaaattatggtcgtacaagtagaattttatgtta |
34813805 |
T |
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| Q |
120 |
atgatttcataatcatacactaagcactaaaataatcttttatgtgcattagaaagtgacatgcatgacttgatatgaaagaatt |
204 |
Q |
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||||||| |||| || |||||||| |||||||||||||||||| ||||| ||| ||| |||||||||| | ||||||||||||| |
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| T |
34813804 |
atgattttataaccaaacactaagaactaaaataatcttttatttgcataagagagtcacatgcatgagtatatatgaaagaatt |
34813720 |
T |
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