View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18525_low_3 (Length: 348)

Name: NF18525_low_3
Description: NF18525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18525_low_3
NF18525_low_3
[»] chr3 (2 HSPs)
chr3 (18-342)||(480118-480442)
chr3 (236-306)||(480099-480169)
[»] chr7 (2 HSPs)
chr7 (247-323)||(37406555-37406631)
chr7 (103-195)||(14617602-14617694)
[»] chr1 (4 HSPs)
chr1 (103-194)||(12301898-12301989)
chr1 (236-310)||(12302034-12302109)
chr1 (231-327)||(12302085-12302177)
chr1 (258-325)||(12302001-12302069)
[»] chr8 (2 HSPs)
chr8 (237-328)||(15543775-15543866)
chr8 (229-281)||(15543822-15543874)
[»] chr5 (1 HSPs)
chr5 (103-195)||(17712499-17712591)
[»] scaffold0001 (1 HSPs)
scaffold0001 (239-306)||(392775-392842)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 480442 - 480118
Alignment:
Q  18 aaaacgttcttgtagttgtacgatggtggaaaaatttacacagtgtaaggactagacttgaccacattaggtgaacaataataattcttaaacacaaatc 117  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  480442 aaaacgttctggtagttgtacgatggtggaaaattttacacagtgtaaggactagacttggccacattaggaaaacaataataattcttaaacacaaatc 480343  T
Q  118 acacacaatcacgttcataatattatcatgacattatccaaaatgatctgatccttattaaattaattgcataacatccattcataatagtctggttctt 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  480342 acacacaatcacgttcataatattgtcatgacattatccaaaatgatatgatccttattaaattaattgcataacatctattcataatagtctggttctt 480243  T
Q  218 agtaaattatttctagttcttattaatttaattgtctaatatttatcgttatactatctagaacgatccagtccttattaatttaattgcctactattta 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  480242 agtaaattatttctagttcttattaatttaattgtctaatatttatcgttatgctatctagaacgatccagtccttattaatttaattgcctaatattta 480143  T
Q  318 tcattatactaacgagaataatcta 342  Q
    |||||||||||||||||| ||||||    
T  480142 tcattatactaacgagaacaatcta 480118  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 480169 - 480099
Alignment:
Q  236 cttattaatttaattgtctaatatttatcgttatactatctagaacgatccagtccttattaatttaattg 306  Q
    |||||||||||||||| |||||||||||| |||||||| | ||||| ||| |||| ||||||| |||||||    
T  480169 cttattaatttaattgcctaatatttatcattatactaacgagaacaatctagtcattattaaattaattg 480099  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 37406631 - 37406555
Alignment:
Q  247 aattgtctaatatttatcgttatactatctagaacgatccagtccttattaatttaattgcctactatttatcatta 323  Q
    ||||||| |||||||||| |||||||||| |||||||||  ||||||||||||||||||||||| ||||||||||||    
T  37406631 aattgtccaatatttatcattatactatcgagaacgatctggtccttattaatttaattgcctaatatttatcatta 37406555  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 195
Target Start/End: Original strand, 14617602 - 14617694
Alignment:
Q  103 tcttaaacacaaatcacacacaatcacgttcataatattatcatgacattatccaaaatgatctgatccttattaaattaattgcataacatc 195  Q
    ||||||||||||||||  ||||||||| || |||| | | |||| |||  ||||| |||||| || |||||||||||||||||||||||||||    
T  14617602 tcttaaacacaaatcatgcacaatcacattaataacaatttcattacacgatccagaatgatatggtccttattaaattaattgcataacatc 14617694  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 12301898 - 12301989
Alignment:
Q  103 tcttaaacacaaatcacacacaatcacgttcataatattatcatgacattatccaaaatgatctgatccttattaaattaattgcataacat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| || | ||| |||| | ||  ||| ||||||||||| ||||||||||||||||    
T  12301898 tcttaaacacaaatcacacacaatcacattcataatattgtctttacactatcgagaacaatcagatccttattagattaattgcataacat 12301989  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 12302034 - 12302109
Alignment:
Q  236 cttattaatttaa-ttgtctaatatttatcgttatactatctagaacgatccagtccttattaatttaattgccta 310  Q
    ||||||||||||| ||| |||||||||||| ||||| |||| ||||| ||  |||||||||||||||||| |||||    
T  12302034 cttattaatttaaattgcctaatatttatcattatattatccagaacaatatagtccttattaatttaatcgccta 12302109  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 12302085 - 12302177
Alignment:
Q  231 tagttcttattaatttaattgtctaatatttatcgttatactatctagaacgatccagtccttattaatttaattgcctactatttatcattatact 327  Q
    |||| |||||||||||||| | |||||||    | |||||||||| ||||||||   ||||||| ||||||||||||||| ||||||| | ||||||    
T  12302085 tagtccttattaatttaatcgcctaatat----cattatactatccagaacgatttggtccttaataatttaattgcctaatatttattaatatact 12302177  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 12302001 - 12302069
Alignment:
Q  258 atttatcgttatactatctagaacgatccagtccttattaatttaa-ttgcctactatttatcattata 325  Q
    ||||||| |||||||||| |||| | ||   ||||||||||||||| ||||||| ||||||||||||||    
T  12302001 atttatcattatactatccagaaaggtctgatccttattaatttaaattgcctaatatttatcattata 12302069  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 15543775 - 15543866
Alignment:
Q  237 ttattaatttaattgtctaatatttatcgttatactatctagaacgatccagtccttattaatttaattgcctactatttatcattatacta 328  Q
    |||| ||||||| ||||||||||||||| ||||| |||| | || |||| ||| |||||  ||||||||||||| |||||||||||||||||    
T  15543775 ttatcaatttaactgtctaatatttatctttatattatccataatgatctagttcttatgtatttaattgcctaatatttatcattatacta 15543866  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 15543822 - 15543874
Alignment:
Q  229 tctagttcttattaatttaattgtctaatatttatcgttatactatctagaac 281  Q
    ||||||||||||  ||||||||| |||||||||||| |||||||||| |||||    
T  15543822 tctagttcttatgtatttaattgcctaatatttatcattatactatccagaac 15543874  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 195
Target Start/End: Complemental strand, 17712591 - 17712499
Alignment:
Q  103 tcttaaacacaaatcacacacaatcacgttcataatattatcatgacattatccaaaatgatctgatccttattaaattaattgcataacatc 195  Q
    ||||||||||||||||  ||||||||| || |||| | | |||| |||  ||||| |||||| || |||||||||||||||||||||||||||    
T  17712591 tcttaaacacaaatcatgcacaatcacattaataacaatttcattacacgatccagaatgatatggtccttattaaattaattgcataacatc 17712499  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 392775 - 392842
Alignment:
Q  239 attaatttaattgtctaatatttatcgttatactatctagaacgatccagtccttattaatttaattg 306  Q
    ||||| ||||||| |||||||||||| ||| ||||||||||| |||   ||||||||||| |||||||    
T  392775 attaacttaattgcctaatatttatcattacactatctagaaggatttggtccttattaaattaattg 392842  T

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