View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18526_high_1 (Length: 600)
Name: NF18526_high_1
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 555; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Complemental strand, 41812174 - 41811600
Alignment:
| Q |
18 |
ttttgcaacctgaagctcgtatgagatgtttgagatgcggttctcataattattgcagtcatccgaaaatttagagcttatagtatctatcccagatatc |
117 |
Q |
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| T |
41812174 |
ttttgcaacctgaagctcgtatgagatgtttgagatgcggttctcataattattgcagtcatccgaaaatttagagcttatagtatctatcccagatatc |
41812075 |
T |
|
| Q |
118 |
atactgttgacacactttttaatacttgtgatagtttcatgaaaagcttcattgtcagtagcaatcctgtcttcaagtgctctctgaacttgctgaaact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41812074 |
atactgttgacacactttttaatacttgtgatagtttcatgaaaagcttcattgtcagtagcaatcctgtcttcaagtgctctctgaacttgctgaaact |
41811975 |
T |
|
| Q |
218 |
tctcttccaactttctaaagctctcttcctcttggtttgacaggcaaagctttacctcaagattcatgacattttcaagcaaagagctgacctcatctcc |
317 |
Q |
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| T |
41811974 |
tttcttccacctttctaaagctctcttcctcttggtttgacaggcaaagctttacctcaagattcatgacattttcaagcaaagagctgacctcatctcc |
41811875 |
T |
|
| Q |
318 |
tttctcttccaggtctcttttcagttcttcaacttggtgttccaaatcagctaccatctgatcttttgaatcaatgtcttcaagaaacatttctgccatt |
417 |
Q |
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| T |
41811874 |
tttctcttccaggtctcttttcagttcttcaacttggtgttccaaatcagctaccatctgatcttttgaatcaatgtcttcaagaaacatttctgccatt |
41811775 |
T |
|
| Q |
418 |
tttctcatcttccactccgcacgtttaagtttgacctgacagtcattataccaactatcaacgtgtttatattcttcatcccgttcttccaatattctca |
517 |
Q |
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| T |
41811774 |
tttctcatcttccactccgcacgtttaagtttgacctgacagtcactataccaactatcaacgtgtttatattcttcatcccgttcttccaatattctca |
41811675 |
T |
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| Q |
518 |
aaagatctaggtatttgttggctaattcattcttttcattgtcaacctttgtgagggcctgtgcatgttcatctc |
592 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41811674 |
aaagatctaggtatttgttggctaattcattattttcattgtcaacctttgtgagggcctgtgcatgttcttctc |
41811600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 249 - 496
Target Start/End: Complemental strand, 41798673 - 41798426
Alignment:
| Q |
249 |
ttggtttgacaggcaaagctttacctcaagattcatgacattttcaagcaaagagctgacctcatctcctttctcttccaggtctcttttcagttcttca |
348 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41798673 |
ttggtttgacaggcgaagctttacctcaagattcctgacattctcaaacaaagtgctaacctcatctcctttctcttccaggtctcttttcaggtcttca |
41798574 |
T |
|
| Q |
349 |
acttggtgttccaaatcagctaccatctgatcttttgaatcaatgtcttcaagaaacatttctgccatttttctcatcttccactccgcacgtttaagtt |
448 |
Q |
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| T |
41798573 |
acttggttttccaaatcagttaccatctgatcttttgacccaatgccttcacgaaactcttctgccatttcttccattttcctctctgcaacttcaagtt |
41798474 |
T |
|
| Q |
449 |
tgacctgacagtcattataccaactatcaacgtgtttatattcttcat |
496 |
Q |
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|||||| || |||||| |||||||||||| |||||||||||||||| |
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| T |
41798473 |
tgaccttccattcattaaaccaactatcaatttgtttatattcttcat |
41798426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 41798958 - 41798804
Alignment:
| Q |
18 |
ttttgcaacctgaagctcgtatgagatgtttgagatgcggttctcataattattgcagtcatccgaaaatttagagcttatagtatctatcccagatatc |
117 |
Q |
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|||||||||||||||||| | ||||||||||| ||| |||||||| ||| |||| || || |||||||| ||| | ||||||||||||||||||| |
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| T |
41798958 |
ttttgcaacctgaagctcatgggagatgtttgatatgtagttctcatgatttttgctttcgtcggaaaatttccggctcaaagtatctatcccagatatc |
41798859 |
T |
|
| Q |
118 |
atactgttgacacactttttaatacttgtgatagtttcatgaaaagcttcattgt |
172 |
Q |
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| T |
41798858 |
acactgttgacacacactttaacacttgtgatagtttcatgaaaagcttcattgt |
41798804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 249 - 430
Target Start/End: Complemental strand, 41805066 - 41804885
Alignment:
| Q |
249 |
ttggtttgacaggcaaagctttacctcaagattcatgacattttcaagcaaagagctgacctcatctcctttctcttccaggtctcttttcagttcttca |
348 |
Q |
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||||||||||| || ||||||| || |||||||| |||||| ||||||||| || ||| | || |||||||| ||||||||| ||||||| |||||| |
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| T |
41805066 |
ttggtttgacaagcgaagcttttccccaagattctcgacattctcaagcaaaaaggtgatgttatttcctttcttgtccaggtcttttttcaggtcttca |
41804967 |
T |
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| Q |
349 |
acttggtgttccaaatcagctaccatctgatcttttgaatcaatgtcttcaagaaacatttctgccatttttctcatcttcc |
430 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||| ||| |||||| || |||||||| |
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| T |
41804966 |
acttggtgttccaaatcagcaaccatctgatcttttgacccaatgccttgaagaaactcttccgccattatttccatcttcc |
41804885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 41805285 - 41805194
Alignment:
| Q |
83 |
aaaatttagagcttatagtatctatcccagatatcatactgttgacacactttttaatacttgtgatagtttcatgaaaagcttcattgtcag |
175 |
Q |
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| T |
41805285 |
aaaattta-agcttacagtatcgattccagatatcacactgttgaaccactctttagtacttgtgatagtttcatgaaaagcttcattgtcag |
41805194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 41798781 - 41798708
Alignment:
| Q |
174 |
agtagcaatcctgtcttcaagtgctctctgaacttgctgaaacttctc-ttccaactttctaaagctctcttcct |
247 |
Q |
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| T |
41798781 |
agtagcaatcctgtcttcaagttctctctgaacttgctgaaac-tctcgttccgcctttctaaagctctcttcct |
41798708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 500 - 573
Target Start/End: Complemental strand, 41798401 - 41798328
Alignment:
| Q |
500 |
gttcttccaatattctcaaaagatctaggtatttgttggctaattcattcttttcattgtcaacctttgtgagg |
573 |
Q |
| |
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||||||||||| ||||| |||||| | || ||||| |||||||||||||||||||||||||||| || ||||| |
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| T |
41798401 |
gttcttccaatgttctctgaagatccatgtttttgtaggctaattcattcttttcattgtcaaccattctgagg |
41798328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 531 - 564
Target Start/End: Complemental strand, 41804763 - 41804730
Alignment:
| Q |
531 |
tttgttggctaattcattcttttcattgtcaacc |
564 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
41804763 |
tttgttggctaattcattcttttcattgtcaacc |
41804730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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