View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18526_high_11 (Length: 350)
Name: NF18526_high_11
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 42837301 - 42836977
Alignment:
| Q |
1 |
taggtataacagattgtacagaagaaagcatgtccatgtgcgacttgtgttgagtttctatgcgagctttaagactgtttataccttcatctgtctccat |
100 |
Q |
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| T |
42837301 |
taggtataacagattgtacagaagaaagcatgtacatgtgcgacttgtgttgagtttctatgcgagctttaagactgtttataccttcatctgtctccat |
42837202 |
T |
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| Q |
101 |
ctccattgatgatgaatgattgattccgatcagatcaattctccaagcagtgcagcgatcttcaggttactggtatggaagcggcgcggctaccacgagc |
200 |
Q |
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| T |
42837201 |
ctccattgatgatgaatgattgattccgatcagatcaattctccaagcagtgcagcgatcttcaggttactggtatggaag-----cggctaccacgagc |
42837107 |
T |
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| Q |
201 |
aacttctcttgggttttccggtgagttggtagtttctaatacactatgtcgatctagggttttggttttattgtttaaaacaaggattactctggtctta |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42837106 |
aactcctcttgggttttccggtgagttggtagtttctaatacactatgtcgatctagggttttggttttattgtttaaaacaaggattactctggtctta |
42837007 |
T |
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| Q |
301 |
tatagtagagaatacttggtattgggcttt |
330 |
Q |
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| T |
42837006 |
tatagtagagaatacttggtattgggcttt |
42836977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 43915011 - 43915079
Alignment:
| Q |
1 |
taggtataacagattgtacagaagaaagcatgtccatgtgcgacttgtgttgagtttctatgcgagctt |
69 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
43915011 |
taggtataacggattgtacagaagaaagcatgtccatgtgtgacttgtgttgggtttctatgcgagctt |
43915079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 43915105 - 43915156
Alignment:
| Q |
74 |
actgtttataccttcatctgtctccatctccattgatgatgaatgattgatt |
125 |
Q |
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|||||||| |||||||||||||||||| | ||| ||||||||||||| |||| |
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| T |
43915105 |
actgtttaaaccttcatctgtctccatgttcatggatgatgaatgatggatt |
43915156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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