View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18526_high_12 (Length: 303)
Name: NF18526_high_12
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 293363 - 293073
Alignment:
| Q |
1 |
ctaattatgtcgtgaaaatatgattatttcatatattgcattggaagtgctaaagttgtgttatgtaattatcgttgcagttaaacagccctgatctgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293363 |
ctaattatgtcgtgaaaatatgattatttcatatattgcattggaagtgctaaagttgtgttatgtaattatcgttgcagttaaacagccctgatctgtt |
293264 |
T |
|
| Q |
101 |
tgatacttattcggctgggattgtactccttcaaatggcaataccaaccttaaggtctcctgctgctttgaagaattttaatttggaaataaaaacctgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293263 |
tgatacttattcggctgggattgtactccttcaaatggcaataccaaccttaaggtctcctgctgctttgaagaattttaatttggaaataaaaacctgt |
293164 |
T |
|
| Q |
201 |
ggatatgatttgaaaaaatggagggaa-tatac--tcgcctcaggcccaacc-tccaaattcttgatagtgaatctggtagaggttgggact |
288 |
Q |
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|||||||||||||||||||||||| || ||||| |||||| | || | || |||||||||||||||||||||||||||||||||||||| |
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| T |
293163 |
ggatatgatttgaaaaaatggaggtaattatacctccgcctc-gaccgacccaaccaaattcttgatagtgaatctggtagaggttgggact |
293073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 74 - 288
Target Start/End: Original strand, 27493424 - 27493638
Alignment:
| Q |
74 |
gttgcagttaaacagccctgatctgtttgatacttattcggctgggattgtactccttcaaatggcaataccaaccttaaggtctcctgctgctttgaag |
173 |
Q |
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||||||||||||||| |||||||| ||||||| ||||| ||||| ||||||||| | ||||| |||||||||||||||||||||| |||||||||||| |
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| T |
27493424 |
gttgcagttaaacagtcctgatctctttgatatgtattctgctggaattgtactcttgcaaattgcaataccaaccttaaggtctcaagctgctttgaag |
27493523 |
T |
|
| Q |
174 |
aattttaatttggaaataaaaacctgtggatatgatttgaaaaaatggagggaatatactcgcctcaggcccaacctccaaattcttgatagtgaatctg |
273 |
Q |
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||||| ||||||||||| | || | ||||||||||||||| ||||||||||| | ||||||| | | | | ||| ||||||| ||||||||||| |||| |
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| T |
27493524 |
aatttcaatttggaaatgaggacatatggatatgatttgaacaaatggagggactctactcgcatgaagtctaacttccaaatccttgatagtgattctg |
27493623 |
T |
|
| Q |
274 |
gtagaggttgggact |
288 |
Q |
| |
|
||||||||||||||| |
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| T |
27493624 |
gtagaggttgggact |
27493638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 74 - 288
Target Start/End: Original strand, 27500082 - 27500296
Alignment:
| Q |
74 |
gttgcagttaaacagccctgatctgtttgatacttattcggctgggattgtactccttcaaatggcaataccaaccttaaggtctcctgctgctttgaag |
173 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| ||||| ||||| ||||||||| | ||||| |||||||||||||||||||||| |||||||||||| |
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| T |
27500082 |
gttgcagttaaacagtcctgatctctttgatatgtattctgctggaattgtactcttgcaaattgcaataccaaccttaaggtctcaagctgctttgaag |
27500181 |
T |
|
| Q |
174 |
aattttaatttggaaataaaaacctgtggatatgatttgaaaaaatggagggaatatactcgcctcaggcccaacctccaaattcttgatagtgaatctg |
273 |
Q |
| |
|
||||| ||||||||||| | || | ||||||||||||||| ||||||||||| | ||||||| | | | | ||| ||||||| ||||||||||| |||| |
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| T |
27500182 |
aatttcaatttggaaatgaggacatatggatatgatttgaacaaatggagggactctactcgcatgaagtctaacttccaaatccttgatagtgattctg |
27500281 |
T |
|
| Q |
274 |
gtagaggttgggact |
288 |
Q |
| |
|
||||||||||||||| |
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|
| T |
27500282 |
gtagaggttgggact |
27500296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 74 - 288
Target Start/End: Original strand, 27514874 - 27515088
Alignment:
| Q |
74 |
gttgcagttaaacagccctgatctgtttgatacttattcggctgggattgtactccttcaaatggcaataccaaccttaaggtctcctgctgctttgaag |
173 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| ||||| ||||| ||||||||| | ||||| |||||||||||||||||||||| |||||||||||| |
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| T |
27514874 |
gttgcagttaaacagtcctgatctctttgatatgtattctgctggaattgtactcttgcaaattgcaataccaaccttaaggtctcaagctgctttgaag |
27514973 |
T |
|
| Q |
174 |
aattttaatttggaaataaaaacctgtggatatgatttgaaaaaatggagggaatatactcgcctcaggcccaacctccaaattcttgatagtgaatctg |
273 |
Q |
| |
|
||||| ||||||||||| | || | ||||||||||||||| ||||||||||| | ||||||| | | | | ||| ||||||| ||||||||||| |||| |
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| T |
27514974 |
aatttcaatttggaaatgaggacatatggatatgatttgaacaaatggagggactctactcgcatgaagtctaacttccaaatccttgatagtgattctg |
27515073 |
T |
|
| Q |
274 |
gtagaggttgggact |
288 |
Q |
| |
|
||||||||||||||| |
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|
| T |
27515074 |
gtagaggttgggact |
27515088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 27496007 - 27496115
Alignment:
| Q |
115 |
ctgggattgtactccttcaaatggcaataccaaccttaaggtctcctgctgctttgaagaattttaatttggaaataaaaacctgtggatatgatttgaa |
214 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||| | || | || ||||||||| || |
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| T |
27496007 |
ctggaattgtgctccttccaatggcaataccaaccttgaggtctccggttgctttgaagaatttcaatttggaaatgaggacatatgtatatgattttaa |
27496106 |
T |
|
| Q |
215 |
aaaatggag |
223 |
Q |
| |
|
|||||||| |
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|
| T |
27496107 |
caaatggag |
27496115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 27502665 - 27502773
Alignment:
| Q |
115 |
ctgggattgtactccttcaaatggcaataccaaccttaaggtctcctgctgctttgaagaattttaatttggaaataaaaacctgtggatatgatttgaa |
214 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||| | || | || ||||||||| || |
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| T |
27502665 |
ctggaattgtgctccttccaatggcaataccaaccttgaggtctccggttgctttgaagaatttcaatttggaaatgaggacatatgtatatgattttaa |
27502764 |
T |
|
| Q |
215 |
aaaatggag |
223 |
Q |
| |
|
|||||||| |
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| T |
27502765 |
caaatggag |
27502773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 27517486 - 27517531
Alignment:
| Q |
115 |
ctgggattgtactccttcaaatggcaataccaaccttaaggtctcc |
160 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
27517486 |
ctgggattgttctccttcaaatggcaatgccaaccttaaggtctcc |
27517531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 27508515 - 27508549
Alignment:
| Q |
120 |
attgtactccttcaaatggcaataccaaccttaag |
154 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |
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| T |
27508515 |
attgtgctccttcaaatggcaataccaaccttaag |
27508549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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