View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18526_high_15 (Length: 277)
Name: NF18526_high_15
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 22 - 264
Target Start/End: Complemental strand, 27836301 - 27836060
Alignment:
| Q |
22 |
tgcccctctaacatattaggattccaacctggtgaagtctttatgatacgtaacattgccaatcttgtacctatgatgaaggtatttgcataattgtggt |
121 |
Q |
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| T |
27836301 |
tgcccctctaacatattaggattccaacctggtgaagtctttatgatacgtaacattgccaatcttgtgcctatgatgaaggtatttgcataattgtggt |
27836202 |
T |
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| Q |
122 |
taaatatgttttcaatctctataaaattacatattttttagtctctatacctactttttagtcccataaactacaaaactacacatttttagtccctacg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27836201 |
taaatatgttttcaatctctataaaattacatattttttagtctctatacctactttttagtcccataaactacaaaactacacatttttagtccctacg |
27836102 |
T |
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| Q |
222 |
aactaaaagaatgcactttcctaaggaccgaaagggttggtat |
264 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
27836101 |
aactaacagaatgcactttcctaaggaccg-aagggttggtat |
27836060 |
T |
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