View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18526_high_18 (Length: 248)
Name: NF18526_high_18
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_high_18 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 14970935 - 14970709
Alignment:
| Q |
11 |
atgaaggaatatatcatggttaatcatgcaatttagcacattgttctaattagacgtttccatttacagctaagagagtatattgatgatacagaagatt |
110 |
Q |
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| T |
14970935 |
atgaaggaatatatcaaggttaatcatgcaatttagcacatagttctaattagacgtttccatttacagctaagagagtatattgatgatacagaagatt |
14970836 |
T |
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| Q |
111 |
atattaatattcaggtaagtaattaactagtaatttatgactagtgcctatatattgattgatatttggtgaatggcttgtaatacaaatgaaatgttta |
210 |
Q |
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| T |
14970835 |
atattaatattcaggtaagt-----------aatttatgactagtacctatatattgattgatatttggtgaatggcttgtaatacaaatgaaatgttta |
14970747 |
T |
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| Q |
211 |
tattttgcagatggacagctatcgaaatcagctgattc |
248 |
Q |
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| T |
14970746 |
tattttgcagatggacaactatcgaaatcagctgattc |
14970709 |
T |
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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 14987975 - 14987910
Alignment:
| Q |
67 |
tttccatttacagctaagagagtatattgatgatacagaagattatattaatattcaggtaagtaa |
132 |
Q |
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| T |
14987975 |
tttctatttacagcttcgagggtacattgatgatacagaagattacattaatattcaggtaagtaa |
14987910 |
T |
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