View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18526_high_2 (Length: 454)

Name: NF18526_high_2
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18526_high_2
NF18526_high_2
[»] chr2 (22 HSPs)
chr2 (17-441)||(44828990-44829428)
chr2 (328-377)||(28223788-28223837)
chr2 (328-380)||(9224263-9224315)
chr2 (328-377)||(4386997-4387046)
chr2 (328-379)||(20244208-20244259)
chr2 (331-377)||(43743842-43743888)
chr2 (328-377)||(4769051-4769100)
chr2 (328-377)||(7716671-7716720)
chr2 (328-377)||(16571118-16571167)
chr2 (328-377)||(32471939-32471988)
chr2 (247-284)||(44792254-44792291)
chr2 (328-384)||(9958740-9958796)
chr2 (328-382)||(6849579-6849633)
chr2 (328-378)||(7583830-7583880)
chr2 (328-374)||(8113337-8113383)
chr2 (330-380)||(18950534-18950584)
chr2 (247-281)||(35165343-35165377)
chr2 (328-369)||(4386363-4386404)
chr2 (328-369)||(6849296-6849337)
chr2 (328-369)||(10883295-10883336)
chr2 (328-377)||(12206788-12206837)
chr2 (328-369)||(28224425-28224466)
[»] chr5 (11 HSPs)
chr5 (328-378)||(39149468-39149518)
chr5 (328-379)||(3957498-3957549)
chr5 (328-378)||(4929543-4929593)
chr5 (328-378)||(38064141-38064191)
chr5 (338-377)||(26688096-26688135)
chr5 (338-377)||(26957827-26957866)
chr5 (324-365)||(21612136-21612177)
chr5 (328-377)||(25074283-25074332)
chr5 (328-377)||(25132252-25132301)
chr5 (328-368)||(25075034-25075074)
chr5 (328-368)||(25133003-25133043)
[»] scaffold0039 (2 HSPs)
scaffold0039 (328-379)||(90613-90664)
scaffold0039 (328-366)||(32902-32940)
[»] chr4 (25 HSPs)
chr4 (328-379)||(199263-199314)
chr4 (330-377)||(39844896-39844943)
chr4 (328-377)||(388753-388802)
chr4 (324-369)||(52869455-52869500)
chr4 (328-380)||(33569717-33569769)
chr4 (328-378)||(2713880-2713930)
chr4 (328-378)||(12639964-12640014)
chr4 (328-378)||(52870153-52870203)
chr4 (328-377)||(25370429-25370478)
chr4 (328-377)||(52597748-52597797)
chr4 (328-377)||(55815825-55815874)
chr4 (337-377)||(18501739-18501779)
chr4 (329-377)||(35428238-35428286)
chr4 (328-379)||(31876786-31876837)
chr4 (328-383)||(33570313-33570368)
chr4 (328-369)||(199007-199048)
chr4 (328-377)||(3220517-3220566)
chr4 (328-369)||(3221424-3221465)
chr4 (328-377)||(7988282-7988331)
chr4 (328-369)||(20075533-20075574)
chr4 (328-377)||(40847677-40847726)
chr4 (328-377)||(48091132-48091181)
chr4 (328-369)||(55816487-55816528)
chr4 (337-377)||(33758133-33758173)
chr4 (335-379)||(45778731-45778775)
[»] chr3 (19 HSPs)
chr3 (328-378)||(3944894-3944944)
chr3 (328-377)||(23584920-23584969)
chr3 (328-377)||(23599743-23599792)
chr3 (328-377)||(25025174-25025223)
chr3 (328-369)||(38279417-38279458)
chr3 (328-369)||(46187033-46187074)
chr3 (337-377)||(41040571-41040611)
chr3 (338-378)||(42356232-42356272)
chr3 (337-380)||(38280304-38280347)
chr3 (335-377)||(8424007-8424049)
chr3 (339-377)||(49752973-49753011)
chr3 (328-369)||(25025801-25025842)
chr3 (328-377)||(31014961-31015010)
chr3 (328-377)||(32672166-32672215)
chr3 (328-377)||(37373965-37374014)
chr3 (342-379)||(37374818-37374855)
chr3 (328-377)||(50687745-50687794)
chr3 (328-377)||(55282458-55282506)
chr3 (337-377)||(53269394-53269434)
[»] chr8 (15 HSPs)
chr8 (328-377)||(7818474-7818523)
chr8 (328-377)||(33114225-33114274)
chr8 (328-378)||(16889194-16889244)
chr8 (328-378)||(35237258-35237308)
chr8 (328-377)||(11999117-11999166)
chr8 (328-377)||(39852154-39852203)
chr8 (328-377)||(41761799-41761848)
chr8 (324-377)||(43433811-43433864)
chr8 (324-377)||(43434697-43434750)
chr8 (337-377)||(37532576-37532616)
chr8 (328-375)||(4374447-4374494)
chr8 (328-369)||(35237900-35237941)
chr8 (328-369)||(43591015-43591056)
chr8 (331-383)||(36780-36832)
chr8 (333-369)||(37533319-37533355)
[»] chr7 (19 HSPs)
chr7 (328-377)||(85086-85135)
chr7 (328-377)||(34854033-34854082)
chr7 (328-374)||(33806604-33806650)
chr7 (324-369)||(84385-84430)
chr7 (328-377)||(36682835-36682884)
chr7 (328-381)||(38914120-38914173)
chr7 (328-380)||(8466537-8466589)
chr7 (338-378)||(42455920-42455960)
chr7 (328-379)||(4271234-4271285)
chr7 (328-383)||(27855560-27855615)
chr7 (337-379)||(30422789-30422830)
chr7 (288-321)||(84448-84481)
chr7 (328-369)||(19816272-19816313)
chr7 (332-377)||(23283883-23283928)
chr7 (328-369)||(24044080-24044121)
chr7 (328-369)||(34853399-34853440)
chr7 (328-369)||(36683501-36683542)
chr7 (328-369)||(42456553-42456594)
chr7 (328-377)||(48881059-48881108)
[»] chr6 (7 HSPs)
chr6 (328-379)||(13936677-13936728)
chr6 (328-377)||(5523883-5523932)
chr6 (328-377)||(33668221-33668270)
chr6 (337-377)||(32079019-32079059)
chr6 (328-369)||(5523208-5523249)
chr6 (328-369)||(12809077-12809118)
chr6 (328-377)||(30611382-30611431)
[»] scaffold0229 (1 HSPs)
scaffold0229 (328-377)||(15270-15319)
[»] chr1 (11 HSPs)
chr1 (328-377)||(1403040-1403089)
chr1 (328-377)||(49534433-49534482)
chr1 (328-378)||(50269247-50269297)
chr1 (328-377)||(7782728-7782777)
chr1 (332-377)||(8560156-8560201)
chr1 (328-377)||(29148940-29148989)
chr1 (328-377)||(42838937-42838986)
chr1 (328-369)||(42839709-42839750)
chr1 (330-371)||(43352827-43352868)
chr1 (336-369)||(48620368-48620401)
chr1 (337-377)||(6288250-6288290)
[»] scaffold0368 (1 HSPs)
scaffold0368 (328-377)||(11821-11870)


Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 44828990 - 44829428
Alignment:
Q  17 aaaaagacctttaaaagtagtattatatgcaattgtttatatatgcatagcaattgagatcttaactaataatgaagcaattttctgtcttacaacgagg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44828990 aaaaagacctttaaaagtagtattatatgcaattgtttatatatgcataacaattgagatcttaactaataatgaagcaattttctgtcttacaacgagg 44829089  T
Q  117 ttgcataatatgattttgagtgctatatattatggatactctcatgagtgtgtttgatcaaattataacaatattggaaaaatatacttttcatgcagtt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44829090 ttgcataatatgattttgagtgctatatattatggatactctcatgagtgtgtttgatcaaattataacaatattggaaaaatatacttttcatgcagtt 44829189  T
Q  217 tatacaacagtagctgacattgttgattatttgaaaaactatttaatggatgaagaaaattacaatggcaatgttgaaagtgtatgataagattgtgctc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44829190 tatacaacagtagctgacattgttgattatttgaaaaactatttaatggatgaagaaaattacaatggcaatgttgaaagtgtatgataagattgtgctc 44829289  T
Q  317 ttcaatt--------------agtgaactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccataaaactatcctttataaggacaa 402  Q
    |||||||              |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44829290 ttcaattgatctaatgactaaagtgaactttcctatggtggaaaaggattcaccattcccatgtgaaatgccaccataaaactatcctttataaggacaa 44829389  T
Q  403 taatttgagtaaaatcaccattgtcaccacagtatagaa 441  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  44829390 taatttgagtaaaatcaccattgtcaccactgtatagaa 44829428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 28223837 - 28223788
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  28223837 aactttcctatggtgggaaaggattaacctttcccatgtgaaatgccacc 28223788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 9224315 - 9224263
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccata 380  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  9224315 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgccaccata 9224263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 4386997 - 4387046
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  4386997 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 4387046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 379
Target Start/End: Original strand, 20244208 - 20244259
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccat 379  Q
    |||||| | |||||||||||||||| ||| ||||||||||||||||||||||    
T  20244208 aacttttccatggtgggaaaggattaacctttcccatgtgaaatgccaccat 20244259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 377
Target Start/End: Original strand, 43743842 - 43743888
Alignment:
Q  331 tttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    ||||| |||||||||||||||||||| ||||||||||||||| ||||    
T  43743842 tttcccatggtgggaaaggattcacctttcccatgtgaaatgtcacc 43743888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 4769051 - 4769100
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||||||||||||||||||||| || || |||||| ||||||||||    
T  4769051 aactttcctatggtgggaaaggattccccttttccatgttaaatgccacc 4769100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 7716720 - 7716671
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| |||||||||||||||| ||  ||||||||||||||||||||    
T  7716720 aactttcccatggtgggaaaggattaacatttcccatgtgaaatgccacc 7716671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 16571167 - 16571118
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||| ||||    
T  16571167 aactttcccatggtgggaaaggattaacctttcccatgtgaaatggcacc 16571118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 32471988 - 32471939
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| ||||||||||||||| |||| ||||||||| ||||||||||    
T  32471988 aactttcccatggtgggaaaggatccacctttcccatgttaaatgccacc 32471939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 44792254 - 44792291
Alignment:
Q  247 ttgaaaaactatttaatggatgaagaaaattacaatgg 284  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  44792254 ttgaaaaactatttaatggatgaggaaaattacaatgg 44792291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 9958740 - 9958796
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccataaaac 384  Q
    ||||||| ||||||||||||||||| | | ||||||||| ||||||||||| |||||    
T  9958740 aactttcttatggtgggaaaggattgatctttcccatgttaaatgccaccacaaaac 9958796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 382
Target Start/End: Original strand, 6849579 - 6849633
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccataaa 382  Q
    |||||||| |||||||||||||||| ||| || |||||| |||||||||| ||||    
T  6849579 aactttcccatggtgggaaaggattaaccttttccatgtaaaatgccaccttaaa 6849633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 7583830 - 7583880
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 378  Q
    |||||||| || |||||||| |||| ||| |||||||||||||||||||||    
T  7583830 aactttcccatagtgggaaaagattaacctttcccatgtgaaatgccacca 7583880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 374
Target Start/End: Original strand, 8113337 - 8113383
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgcc 374  Q
    |||||||| ||||||| |||||||| ||| |||||||||||||||||    
T  8113337 aactttcccatggtggaaaaggattaacctttcccatgtgaaatgcc 8113383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 380
Target Start/End: Original strand, 18950534 - 18950584
Alignment:
Q  330 ctttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccata 380  Q
    |||||| |||||||||||||||| ||| || |||| |||||||||||||||    
T  18950534 ctttcccatggtgggaaaggattaaccttttccatatgaaatgccaccata 18950584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 35165377 - 35165343
Alignment:
Q  247 ttgaaaaactatttaatggatgaagaaaattacaa 281  Q
    ||||||||||||||||||||||| |||||||||||    
T  35165377 ttgaaaaactatttaatggatgaggaaaattacaa 35165343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 4386404 - 4386363
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||    
T  4386404 aactttcctatggtgggaaagtattaacctttcccatgtgaa 4386363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 6849337 - 6849296
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  6849337 aactttcccatggtgggaaaggattaacctttcccatgtgaa 6849296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 10883336 - 10883295
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  10883336 aactttcccatggtgggaaaggattaacctttcccatgtgaa 10883295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 12206837 - 12206788
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||  |||||||||||||||| ||| ||||||||||||||| ||||    
T  12206837 aactttctcatggtgggaaaggattaacctttcccatgtgaaatgtcacc 12206788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 28224425 - 28224466
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  28224425 aactttcccatggtgggaaaggattaacctttcccatgtgaa 28224466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 39149468 - 39149518
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 378  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  39149468 aactttcccatggtgggaaaggattcacctttcccatgtgaaatgccacca 39149518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 379
Target Start/End: Complemental strand, 3957549 - 3957498
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccat 379  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  3957549 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgccaccat 3957498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 4929543 - 4929593
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 378  Q
    |||||||| ||||||| |||||||| ||| |||||||||||||||||||||    
T  4929543 aactttcccatggtggaaaaggattaacctttcccatgtgaaatgccacca 4929593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 38064191 - 38064141
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 378  Q
    |||||||| ||||||||||||  |||||| |||||||||||||||||||||    
T  38064191 aactttcccatggtgggaaagttttcacccttcccatgtgaaatgccacca 38064141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 377
Target Start/End: Original strand, 26688096 - 26688135
Alignment:
Q  338 tggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  26688096 tggtgggaaaggattaacctttcccatgtgaaatgccacc 26688135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 377
Target Start/End: Original strand, 26957827 - 26957866
Alignment:
Q  338 tggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  26957827 tggtgggaaaggattaacctttcccatgtgaaatgccacc 26957866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 21612136 - 21612177
Alignment:
Q  324 agtgaactttcctatggtgggaaaggattcaccattcccatg 365  Q
    ||||| |||||||||||||||||| |||||||| ||||||||    
T  21612136 agtgacctttcctatggtgggaaaagattcacctttcccatg 21612177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 25074332 - 25074283
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| ||||||| ||| |||| |||||| |||||||||||||||||    
T  25074332 aactttcccatggtggaaaaagattaaccatttccatgtgaaatgccacc 25074283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 25132301 - 25132252
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| ||||||| ||| |||| |||||| |||||||||||||||||    
T  25132301 aactttcccatggtggaaaaagattaaccatttccatgtgaaatgccacc 25132252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 25075034 - 25075074
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtga 368  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  25075034 aactttcccatggtgggaaaggattaacctttcccatgtga 25075074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 25133003 - 25133043
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtga 368  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  25133003 aactttcccatggtgggaaaggattaacctttcccatgtga 25133043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 379
Target Start/End: Complemental strand, 90664 - 90613
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccat 379  Q
    |||||||||||||||| ||| |||||||| ||||||||||||||||||||||    
T  90664 aactttcctatggtggaaaatgattcacctttcccatgtgaaatgccaccat 90613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 366
Target Start/End: Complemental strand, 32940 - 32902
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgt 366  Q
    |||||||||||||||||||||||||| || |||||||||    
T  32940 aactttcctatggtgggaaaggattctcctttcccatgt 32902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 379
Target Start/End: Original strand, 199263 - 199314
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccat 379  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  199263 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgccaccat 199314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 377
Target Start/End: Complemental strand, 39844943 - 39844896
Alignment:
Q  330 ctttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||    
T  39844943 ctttcctatggtgggaaaggattcccctttcccatgtgaaatgccacc 39844896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 388802 - 388753
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  388802 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 388753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 52869500 - 52869455
Alignment:
Q  324 agtgaactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||    
T  52869500 agtgaactttcccatggtgggaaaggattcacctttcccatgtgaa 52869455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 33569769 - 33569717
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccata 380  Q
    |||||| | |||||||||||||||| ||| |||||||||||||||||||||||    
T  33569769 aacttttccatggtgggaaaggattgacctttcccatgtgaaatgccaccata 33569717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 2713880 - 2713930
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 378  Q
    |||||| | |||||||||||||||| ||| |||||||||||||||||||||    
T  2713880 aacttttccatggtgggaaaggattaacctttcccatgtgaaatgccacca 2713930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 12640014 - 12639964
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 378  Q
    |||||||| ||||||| |||||||| ||| |||||||||||||||||||||    
T  12640014 aactttcccatggtggaaaaggattaacctttcccatgtgaaatgccacca 12639964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 52870153 - 52870203
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 378  Q
    |||||||| ||| ||| |||||||||||| |||||||||||||||||||||    
T  52870153 aactttcccatgatggaaaaggattcacctttcccatgtgaaatgccacca 52870203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 25370429 - 25370478
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| |||||||||||||||| ||| ||||||||| ||||||||||    
T  25370429 aactttcccatggtgggaaaggattaacctttcccatgtaaaatgccacc 25370478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 52597748 - 52597797
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||||||||||  |||||||| ||| ||||||||||||||||||||    
T  52597748 aactttcctatggtgaaaaaggattaacctttcccatgtgaaatgccacc 52597797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 55815874 - 55815825
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| || ||||||||||||| ||| ||||||||||||||||||||    
T  55815874 aactttcccatagtgggaaaggattaacctttcccatgtgaaatgccacc 55815825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 18501779 - 18501739
Alignment:
Q  337 atggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  18501779 atggtgggaaaggattaacctttcccatgtgaaatgccacc 18501739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 35428238 - 35428286
Alignment:
Q  329 actttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    ||||||| |||||||||||||||| ||| ||||||| ||||||||||||    
T  35428238 actttcccatggtgggaaaggattaacctttcccatctgaaatgccacc 35428286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 379
Target Start/End: Complemental strand, 31876837 - 31876786
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccat 379  Q
    |||||| | ||||||| |||||||| ||| ||||||||||||||||||||||    
T  31876837 aacttttccatggtggaaaaggattaacctttcccatgtgaaatgccaccat 31876786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 33570313 - 33570368
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccataaaa 383  Q
    ||||||| |||||||| |||||||| ||| || |||||||||||||||||| ||||    
T  33570313 aactttcttatggtggaaaaggattgaccttttccatgtgaaatgccaccaaaaaa 33570368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 199048 - 199007
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  199048 aactttcccatggtgggaaaggattaacctttcccatgtgaa 199007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 3220566 - 3220517
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||||||| |||||||||||||||| ||||||| | ||||| ||||    
T  3220566 aactttcctatgatgggaaaggattcacctttcccatataaaatgtcacc 3220517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 3221424 - 3221465
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||| || ||||||||||||||||| ||||||||||||    
T  3221424 aactttcccatcgtgggaaaggattcacctttcccatgtgaa 3221465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 7988282 - 7988331
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    ||||||||||||||| |||||||||  || ||||||||| ||||||||||    
T  7988282 aactttcctatggtgagaaaggatttccctttcccatgttaaatgccacc 7988331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 20075574 - 20075533
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  20075574 aactttcccatggtgggaaaggattaacctttcccatgtgaa 20075533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 40847726 - 40847677
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||  |||||||||||||||| ||| || |||||||||||||||||    
T  40847726 aactttctcatggtgggaaaggattaaccttttccatgtgaaatgccacc 40847677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 48091132 - 48091181
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| ||||||||||| |||| ||| ||||||| ||||||||||||    
T  48091132 aactttcccatggtgggaaaagattaacctttcccatatgaaatgccacc 48091181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 55816487 - 55816528
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  55816487 aactttcccatggtgggaaaggattaacctttcccatgtgaa 55816528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 33758133 - 33758173
Alignment:
Q  337 atggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||||||||||| ||| ||||||||||||||| ||||    
T  33758133 atggtgggaaaggattgacctttcccatgtgaaatgacacc 33758173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 45778731 - 45778775
Alignment:
Q  335 ctatggtgggaaaggattcaccattcccatgtgaaatgccaccat 379  Q
    |||||||||||||||||| ||| |||||||||||||  |||||||    
T  45778731 ctatggtgggaaaggattaacctttcccatgtgaaactccaccat 45778775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 3944944 - 3944894
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 378  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  3944944 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacca 3944894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 23584920 - 23584969
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||| | |||||||||||||||| ||| ||||||||||||||||||||    
T  23584920 aactttaccatggtgggaaaggattaacctttcccatgtgaaatgccacc 23584969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 23599743 - 23599792
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||| | |||||||||||||||| ||| ||||||||||||||||||||    
T  23599743 aactttaccatggtgggaaaggattaacctttcccatgtgaaatgccacc 23599792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 25025223 - 25025174
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| ||| |||||||||||| ||| ||||||||||||||||||||    
T  25025223 aactttcccatgatgggaaaggattaacctttcccatgtgaaatgccacc 25025174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 38279458 - 38279417
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  38279458 aactttcccatggtgggaaaggattcacctttcccatgtgaa 38279417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 46187033 - 46187074
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    ||||||||||||||| ||||||||||||| ||||||||||||    
T  46187033 aactttcctatggtgagaaaggattcacctttcccatgtgaa 46187074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 41040611 - 41040571
Alignment:
Q  337 atggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  41040611 atggtgagaaaggattcacctttcccatgtgaaatgccacc 41040571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 42356272 - 42356232
Alignment:
Q  338 tggtgggaaaggattcaccattcccatgtgaaatgccacca 378  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  42356272 tggtgggaaaggattgacctttcccatgtgaaatgccacca 42356232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 38280304 - 38280347
Alignment:
Q  337 atggtgggaaaggattcaccattcccatgtgaaatgccaccata 380  Q
    ||||||||||||||||  || |||||||||||||||||||||||    
T  38280304 atggtgggaaaggattggcctttcccatgtgaaatgccaccata 38280347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 8424049 - 8424007
Alignment:
Q  335 ctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||    
T  8424049 ctatggtgggaaaggattcacctttcccatgttaaatgacacc 8424007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 377
Target Start/End: Original strand, 49752973 - 49753011
Alignment:
Q  339 ggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  49752973 ggtgggaaaggattaacctttcccatgtgaaatgccacc 49753011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 25025801 - 25025842
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  25025801 aactttcccatggtgggaaaggattaacctttcccatgtgaa 25025842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 31014961 - 31015010
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||||||| ||||||| |||| ||| ||||||| ||||||||||||    
T  31014961 aactttcctatgatgggaaaagattaacctttcccatatgaaatgccacc 31015010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 32672215 - 32672166
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| ||| |||||||||||| ||| ||||||||| ||||||||||    
T  32672215 aactttcccatgttgggaaaggattaacctttcccatgtaaaatgccacc 32672166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 37374014 - 37373965
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| ||||||||||| |||| ||| ||||||||| ||||||||||    
T  37374014 aactttcccatggtgggaaaagattaacctttcccatgtaaaatgccacc 37373965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 37374855 - 37374818
Alignment:
Q  342 gggaaaggattcaccattcccatgtgaaatgccaccat 379  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  37374855 gggaaaggattaacctttcccatgtgaaatgccaccat 37374818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 50687745 - 50687794
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| |||||||||||| ||| ||| ||||||||||||||| ||||    
T  50687745 aactttcccatggtgggaaagaattaacctttcccatgtgaaatgtcacc 50687794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 55282458 - 55282506
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| |||||||||||||||| | | ||||||||||||||||||||    
T  55282458 aactttcccatggtgggaaaggattaaac-ttcccatgtgaaatgccacc 55282506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 53269394 - 53269434
Alignment:
Q  337 atggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||||||||||| ||| ||||||||||||||| ||||    
T  53269394 atggtgggaaaggattaacctttcccatgtgaaatgtcacc 53269434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 7818523 - 7818474
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  7818523 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 7818474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 33114225 - 33114274
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  33114225 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 33114274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 16889244 - 16889194
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 378  Q
    |||||||| ||||||||||| |||| ||| |||||||||||||||||||||    
T  16889244 aactttcccatggtgggaaaagattaacctttcccatgtgaaatgccacca 16889194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 35237308 - 35237258
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 378  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||| |||||    
T  35237308 aactttcccatggtgggaaaggattaacctttcccatgtgaaatgtcacca 35237258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 11999117 - 11999166
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  11999117 aactttcccatggtgggaaatgattaacctttcccatgtgaaatgccacc 11999166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 39852203 - 39852154
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| |||||||||||||||| ||| ||||||| ||||||||||||    
T  39852203 aactttcccatggtgggaaaggattaacctttcccatttgaaatgccacc 39852154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 41761848 - 41761799
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||| ||| |||||||||||||||| ||| ||||||||||||||||||||    
T  41761848 aactgtcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 41761799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 377
Target Start/End: Complemental strand, 43433864 - 43433811
Alignment:
Q  324 agtgaactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||||||| ||||||||||| ||||| || ||||||||| ||||||||||    
T  43433864 agtgaactttcccatggtgggaaatgattcccctttcccatgttaaatgccacc 43433811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 377
Target Start/End: Original strand, 43434697 - 43434750
Alignment:
Q  324 agtgaactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||||| | ||||||||||| |||||||| ||||||||| ||||||||||    
T  43434697 agtgaacttttccatggtgggaaaagattcacctttcccatgttaaatgccacc 43434750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 37532616 - 37532576
Alignment:
Q  337 atggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  37532616 atggtgggaaaggattaacctttcccatgtgaaatgccacc 37532576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 4374494 - 4374447
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgcca 375  Q
    |||||||||||||||||||| |||| ||| ||| ||||||||||||||    
T  4374494 aactttcctatggtgggaaaagattgacctttctcatgtgaaatgcca 4374447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 35237900 - 35237941
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||| |||||||||||||||||| ||| ||||||||||||    
T  35237900 aacttttctatggtgggaaaggattaacctttcccatgtgaa 35237941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 43591056 - 43591015
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  43591056 aactttcccatggtgggaaaggattaacctttcccatgtgaa 43591015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 36780 - 36832
Alignment:
Q  331 tttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccataaaa 383  Q
    ||||||||||||||||||  |||||  | ||||||||||||||||||| ||||    
T  36780 tttcctatggtgggaaagttttcacattccccatgtgaaatgccaccagaaaa 36832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 37533319 - 37533355
Alignment:
Q  333 tcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  37533319 tcctatggtgggaaaggattaacctttcccatgtgaa 37533355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 85086 - 85135
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||| | |||||||||||||||||||| ||||||||||||||||||||    
T  85086 aacttttccatggtgggaaaggattcacctttcccatgtgaaatgccacc 85135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 34854033 - 34854082
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  34854033 aactttcctatggtgggaaaggattaacctttcccatgtgaaatggcacc 34854082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 374
Target Start/End: Original strand, 33806604 - 33806650
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgcc 374  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||    
T  33806604 aactttccaatggtgggaaaggattgacctttcccatgtgaaatgcc 33806650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 84430 - 84385
Alignment:
Q  324 agtgaactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||||||| || ||||||||||||||||| ||||||||||||    
T  84430 agtgaactttcccatagtgggaaaggattcacctttcccatgtgaa 84385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 36682884 - 36682835
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  36682884 aactttcccatggtgggaaatgattaacctttcccatgtgaaatgccacc 36682835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 38914120 - 38914173
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccataa 381  Q
    ||||||||||||||||||||||||||||| || | |||  ||||||||||||||    
T  38914120 aactttcctatggtgggaaaggattcaccttttctatggtaaatgccaccataa 38914173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 8466537 - 8466589
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccata 380  Q
    |||||||| ||||||| ||||  |||||| |||||||||||||||||||||||    
T  8466537 aactttcccatggtggaaaagttttcacccttcccatgtgaaatgccaccata 8466589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 42455960 - 42455920
Alignment:
Q  338 tggtgggaaaggattcaccattcccatgtgaaatgccacca 378  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  42455960 tggtgggaaaggattaacctttcccatgtgaaatgccacca 42455920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 379
Target Start/End: Original strand, 4271234 - 4271285
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccat 379  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||  |||||||    
T  4271234 aactttcctttggtgggaaaggattcacctttcccatgttaaactccaccat 4271285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 27855615 - 27855560
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccataaaa 383  Q
    |||||||  ||||||||||| |||| ||| |||||||||||||||||||| |||||    
T  27855615 aactttctcatggtgggaaatgattaacctttcccatgtgaaatgccaccttaaaa 27855560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 379
Target Start/End: Original strand, 30422789 - 30422830
Alignment:
Q  337 atggtgggaaaggattcaccattcccatgtgaaatgccaccat 379  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  30422789 atggtgggaaag-attcacctttcccatgtgaaatgccaccat 30422830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 84481 - 84448
Alignment:
Q  288 tgttgaaagtgtatgataagattgtgctcttcaa 321  Q
    ||||| ||||||||||||||||||||||||||||    
T  84481 tgttgcaagtgtatgataagattgtgctcttcaa 84448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 19816313 - 19816272
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  19816313 aactttcccatggtgggaaaggattaacctttcccatgtgaa 19816272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 23283883 - 23283928
Alignment:
Q  332 ttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||| ||||||||||||||||| || ||||||||||||||| ||||    
T  23283883 ttcccatggtgggaaaggattcccctttcccatgtgaaatgtcacc 23283928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 24044080 - 24044121
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  24044080 aactttcccatggtgggaaaggattaacctttcccatgtgaa 24044121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 34853440 - 34853399
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  34853440 aactttcccatggtgggaaaggattaacctttcccatgtgaa 34853399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 36683501 - 36683542
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  36683501 aactttcccatggtgggaaaggattaacctttcccatgtgaa 36683542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 42456553 - 42456594
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  42456553 aactttcccatggtgggaaaggattaacctttcccatgtgaa 42456594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 48881059 - 48881108
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||| |||||||||||||||||||| ||| || |||||| ||||||||||    
T  48881059 aactgtcctatggtgggaaaggattaaccttttccatgtaaaatgccacc 48881108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 379
Target Start/End: Original strand, 13936677 - 13936728
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccaccat 379  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||| ||||||    
T  13936677 aactttcccatggtgggaaaggattaacctttcccatgtgaaatggcaccat 13936728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 5523883 - 5523932
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  5523883 aactttccaatggtgggaaaagattaacctttcccatgtgaaatgccacc 5523932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 33668270 - 33668221
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  33668270 aactttcccatggtgggaaatgattaacctttcccatgtgaaatgccacc 33668221  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 32079059 - 32079019
Alignment:
Q  337 atggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    ||||||| |||||||||||| ||||||||||||||||||||    
T  32079059 atggtggaaaaggattcacctttcccatgtgaaatgccacc 32079019  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 5523249 - 5523208
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||||||||||| |||||||| ||| ||||||||||||    
T  5523249 aactttcctatggtggaaaaggattaacctttcccatgtgaa 5523208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 12809118 - 12809077
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||    
T  12809118 aactttcctatagtgggaaaggattaacctttcccatgtgaa 12809077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 30611382 - 30611431
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| |||||||||||||||| ||  ||| ||||||||||||||||    
T  30611382 aactttcccatggtgggaaaggattaacatttctcatgtgaaatgccacc 30611431  T

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Target: scaffold0229 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 15270 - 15319
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| |||||||||||||||| ||| || |||||||||||||||||    
T  15270 aactttcccatggtgggaaaggattaaccttttccatgtgaaatgccacc 15319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 1403089 - 1403040
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| |||||||||||||||| ||| || |||||||||||||||||    
T  1403089 aactttcccatggtgggaaaggattaaccttttccatgtgaaatgccacc 1403040  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 49534433 - 49534482
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||| | |||||||||||||||| ||| ||||||||||||||||||||    
T  49534433 aacttttccatggtgggaaaggattaacctttcccatgtgaaatgccacc 49534482  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 50269247 - 50269297
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacca 378  Q
    |||||||| |||||||||||||||||||  ||||||||  |||||||||||    
T  50269247 aactttcccatggtgggaaaggattcacatttcccatggtaaatgccacca 50269297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 7782728 - 7782777
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| ||||| ||||||||||  || ||||||||||||||||||||    
T  7782728 aactttcccatggtaggaaaggattggcctttcccatgtgaaatgccacc 7782777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 8560201 - 8560156
Alignment:
Q  332 ttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||| ||||||| |||||||| ||| ||||||||||||||||||||    
T  8560201 ttcccatggtggaaaaggattaacctttcccatgtgaaatgccacc 8560156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 29148989 - 29148940
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| |||||||||||||||| ||| ||||| ||| ||||||||||    
T  29148989 aactttcccatggtgggaaaggattaacctttcccgtgttaaatgccacc 29148940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 42838986 - 42838937
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| |||||||||||||||| ||| || |||||||||||| ||||    
T  42838986 aactttcccatggtgggaaaggattaacctttaccatgtgaaatggcacc 42838937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 42839750 - 42839709
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaa 369  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  42839750 aactttcccatggtgggaaaggattaacctttcccatgtgaa 42839709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 43352827 - 43352868
Alignment:
Q  330 ctttcctatggtgggaaaggattcaccattcccatgtgaaat 371  Q
    |||||||||||||| |||||||||||| ||||||| ||||||    
T  43352827 ctttcctatggtggaaaaggattcacctttcccatatgaaat 43352868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 48620368 - 48620401
Alignment:
Q  336 tatggtgggaaaggattcaccattcccatgtgaa 369  Q
    ||||||||||||||||||||| ||||||||||||    
T  48620368 tatggtgggaaaggattcacctttcccatgtgaa 48620401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 6288250 - 6288290
Alignment:
Q  337 atggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||| ||||||||| ||| ||||||||||||||||||||    
T  6288250 atggtgagaaaggattaacctttcccatgtgaaatgccacc 6288290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 11821 - 11870
Alignment:
Q  328 aactttcctatggtgggaaaggattcaccattcccatgtgaaatgccacc 377  Q
    |||||||| |||||||||||||||| ||| || |||||||||||| ||||    
T  11821 aactttcccatggtgggaaaggattaacctttaccatgtgaaatggcacc 11870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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