View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18526_high_20 (Length: 241)
Name: NF18526_high_20
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 53032143 - 53032371
Alignment:
| Q |
1 |
cttccttgttccgctttcttttcctcattattcccttttcacatcacttcattactactacatacataataaacac-------acgttctatcctattct |
93 |
Q |
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| T |
53032143 |
cttccttgttctgctttcttttcttcattattcccttttcacatcacttca---ctactacatacataa-acacacgttcaccactttctatcctattct |
53032238 |
T |
|
| Q |
94 |
cttttcttgtcccttctttaactctcttcgtaaccaaaactaatcatacttaattcttttaattttcctcttaatggaaattgaacaacaactaccaatg |
193 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53032239 |
cttttcttgtcccttctttaactctcttcataaccaaaactaatcatacttaattcttttaattttcctcttaatggaaattgaacaacaactatcaatg |
53032338 |
T |
|
| Q |
194 |
atcaagtctaggttcaaacgcatctgtgtttat |
226 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
53032339 |
atcaagtctaggttcaaacgcatctgtgtttat |
53032371 |
T |
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