View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18526_high_24 (Length: 238)
Name: NF18526_high_24
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_high_24 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 14970352 - 14970573
Alignment:
| Q |
17 |
atagaaatggaaaaaattcctggaaaaataaccacctgccaatagaaaagatataccatattctttatatcgaaaatctcatttgaaaattgcataaaga |
116 |
Q |
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| T |
14970352 |
atagaaatggaaaaaaatcctggaaaaataaccacctgccaatagaaaagatataccatattctttatatcgaaaatctcatttgaaaattgcataaaga |
14970451 |
T |
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| Q |
117 |
aaacattgtttaattgtagttacccatttgaacatgtaaccatggtcttttgtccaagtaaatggaatattcatgctaaatattccaatcaccaatgcat |
216 |
Q |
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| T |
14970452 |
aaacattgttcaattgtagttacccatttgaacatgtaaccatggtcttttgtccaagtaaatggaatattcatgctaaatattccaatcaccaatgcat |
14970551 |
T |
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| Q |
217 |
aaaatgttagagaaagttctcc |
238 |
Q |
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| T |
14970552 |
aaaatgatagagaaagttctcc |
14970573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 235
Target Start/End: Original strand, 14987558 - 14987678
Alignment:
| Q |
116 |
aaaacattgtttaa-ttgtagttacccatttgaacatgtaaccatggtcttttgtccaagtaaatggaatattcatgctaaatattccaatcaccaatgc |
214 |
Q |
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| T |
14987558 |
aaaacattgtttaaattgtggttacccatttgaacatgtaaccatggttgttttcccaaccatatggaatattcatgccaagtattccagtcaccaccga |
14987657 |
T |
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| Q |
215 |
ataaaatgttagagaaagttc |
235 |
Q |
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| T |
14987658 |
ataaaatgctagagaaagttc |
14987678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 14987456 - 14987504
Alignment:
| Q |
17 |
atagaaatggaaaaaattcctggaaaaataaccacctgccaatagaaaa |
65 |
Q |
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| T |
14987456 |
atagatatggaaaaaattcctgtaaaaataaccacctgccaataaaaaa |
14987504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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