View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18526_high_27 (Length: 228)
Name: NF18526_high_27
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_high_27 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 45969934 - 45969713
Alignment:
| Q |
7 |
atacctatatatttcattcacttttctcatatccaaccaataatactctctaatatggaaggacaatgcacttagtctgttgttaatttctccgactagg |
106 |
Q |
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| T |
45969934 |
atacctgtatatttcattcacttttctcatatccaaccaataatactctctaatatggaaggacaatgcacttagtctgttgttaatttctccgactagg |
45969835 |
T |
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| Q |
107 |
ctcttagattcatcgttcttgacaaccatttcacgcgccgagcgtagagccgagtaaaataatgcttgaatctcaagaggatggccatgaatacccatcc |
206 |
Q |
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| T |
45969834 |
ctcttagattcatcgttcttgacaaccatttcacgtgccgagcgtagagccgagtaaaataatgcttgaatctcaagaggatggccatgaatacccatcc |
45969735 |
T |
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| Q |
207 |
ttctatctatcatgcaggatcc |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
45969734 |
ttctatctatcatgcaggatcc |
45969713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 37652952 - 37653034
Alignment:
| Q |
11 |
ctatatatttcattcacttttctcatatccaaccaataatactctctaatatggaaggacaatgcacttagtctgttgttaat |
93 |
Q |
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|||||||||||||| | ||| ||||||||| ||||||||| | |||||| ||||| || | |||||| |||||||||||||| |
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| T |
37652952 |
ctatatatttcattaatctttttcatatccacccaataatattgtctaatgtggaacgatagtgcactcagtctgttgttaat |
37653034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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