View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18526_high_4 (Length: 433)
Name: NF18526_high_4
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 27 - 401
Target Start/End: Original strand, 28728451 - 28728842
Alignment:
| Q |
27 |
ttcacttttcaccaaaagctccttagctgtattctgttnnnnnnnnnn-ttaaccatgttgcaaaaaggatatttcataggacagcaaagacaacagttt |
125 |
Q |
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| T |
28728451 |
ttcacttttcaccaaaagctccttggctgtattctgtaaaaaaaaaaaattaaccatgttgcaaaaaggatattttataggacagcaaagacaacagttt |
28728550 |
T |
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| Q |
126 |
agtcaatcaatgaatgagaactaaattattttaggtgcatacaaactcatttcgcaaatatttctatccgttcaccctatttcatcat------------ |
213 |
Q |
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| T |
28728551 |
agtcaaccaatgaatgagaactaaattattttaggtgcataaaaactcatttcgcaaatatttctatccgttcgcactatttcatcataggtacaaagga |
28728650 |
T |
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| Q |
214 |
----caagcaagaggagtgttgtaagacacataatactgattggctgtgcctacaggtagaaagattgcaagagtgagtttctagagatgacaatttaag |
309 |
Q |
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| T |
28728651 |
aaatcaagcaagaggagagttgtaagacacataatactgattggctgtgcctacaggtagaaagattgcaagagtgagtttctagagatgacaatttaag |
28728750 |
T |
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| Q |
310 |
agcagccaagtttactcaaaaaatccaaacaaaagtagtaactcttcctctgaatcataacatcagtctacaccaacaaacaaccctttcct |
401 |
Q |
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| T |
28728751 |
agcagccaagtttactcacaaaacccaaacaaaagtagtaacacttcctctgaatcataacatcagtctacaccaacaaacaatcctttcct |
28728842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 28735227 - 28735274
Alignment:
| Q |
113 |
aagacaacagtttagtcaatcaatgaatgagaactaaattattttagg |
160 |
Q |
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| T |
28735227 |
aagacaacattttagttaatcaatgaatgtgaactatattattttagg |
28735274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 32281300 - 32281383
Alignment:
| Q |
88 |
aaaaaggatatttcataggacagcaaagacaacagtttagtcaatcaatgaatgagaactaaattattttaggtgcatacaaac |
171 |
Q |
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|||||||| |||||||||||||||||| |||||| ||| || ||||||||||| |||||| ||| |||||||||||| ||||| |
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| T |
32281300 |
aaaaaggaaatttcataggacagcaaacacaacattttggttaatcaatgaatatgaactatattgttttaggtgcatgcaaac |
32281383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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