View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18526_high_6 (Length: 405)

Name: NF18526_high_6
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18526_high_6
NF18526_high_6
[»] chr1 (2 HSPs)
chr1 (181-387)||(41180699-41180916)
chr1 (15-166)||(41180968-41181119)
[»] chr3 (3 HSPs)
chr3 (279-369)||(43339893-43339983)
chr3 (88-155)||(9256425-9256492)
chr3 (175-264)||(43339980-43340068)
[»] chr8 (1 HSPs)
chr8 (81-155)||(15218145-15218219)
[»] chr4 (1 HSPs)
chr4 (81-155)||(27453028-27453102)
[»] chr2 (1 HSPs)
chr2 (81-155)||(45329517-45329591)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 181 - 387
Target Start/End: Complemental strand, 41180916 - 41180699
Alignment:
Q  181 aacccaagtacaacagttaccacattacaaaccaaccaaaagcnnnnnnnttaagaacaaagcacctcaaacaaa-gagggcagaaatcaatcta----- 274  Q
    |||||||||||||||||||||||||||||||||||||||||||       | ||||||||||||||||||||||| |||||||||||||||||||         
T  41180916 aacccaagtacaacagttaccacattacaaaccaaccaaaagcagaaaaat-aagaacaaagcacctcaaacaaaagagggcagaaatcaatctaaaatc 41180818  T
Q  275 ------gaaacagataaaccagcactatctctaagaagaagaggaagtaagaaagtaggtggggctggccaccattgtgaagataacaaggcaggcccct 368  Q
          ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41180817 aatttagaaacggataaaccagcactatctctatgaagaagaggaagtaagaaagtaggtggggctggccaccattgtgaagataacaaggcaagcccct 41180718  T
Q  369 gcccattcttggctagagc 387  Q
    ||||||||||| |||||||    
T  41180717 gcccattcttgtctagagc 41180699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 41181119 - 41180968
Alignment:
Q  15 atgaatcgaatatgcaatattatgaaggctaggttgttgtcaaaaagcaacaaaccgtataacctaagtacaatgtcaaatgagcaatggccactgcatt 114  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41181119 atgaatcgaatatacaatagtatgaaggctaggttgttgtcaaaaagcaacaaaccgtataacctaagtacaatgtcaaatgagcagtggccactgcatt 41181020  T
Q  115 gccgtctgattgcaatgaaaaataattaagggtttccacatttttcgcgaac 166  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||| ||||    
T  41181019 gccgtttgattgcaatgaaaaataattaagggttcccacatttttcgtgaac 41180968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 43339983 - 43339893
Alignment:
Q  279 cagataaaccagcactatctctaagaagaagaggaagtaagaaagtaggtggggctggccaccattgtgaagataacaaggcaggcccctg 369  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43339983 cagataaaccagcactatccctaagaagaagagaaagtaagaaagtaggtggggctggccaccattgtgaagataacaaggcaagcccctg 43339893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 9256425 - 9256492
Alignment:
Q  88 tgtcaaatgagcaatggccactgcattgccgtctgattgcaatgaaaaataattaagggtttccacat 155  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| ||||||    
T  9256425 tgtcagatgagcaagggccactgcattgccgtctgaatgcaatgaaaaataagtaagggttcccacat 9256492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 43340068 - 43339980
Alignment:
Q  175 ggcctgaacccaagtacaacagttaccacattacaaaccaaccaaaagcnnnnnnnttaagaacaaagcacctcaaacaaagagggcaga 264  Q
    |||||||| |||||||||||||||| |||||||||||| ||||||||||         ||| ||||||||||||||||||||||||||||    
T  43340068 ggcctgaatccaagtacaacagttatcacattacaaacaaaccaaaagcaaagaaacaaag-acaaagcacctcaaacaaagagggcaga 43339980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 15218219 - 15218145
Alignment:
Q  81 agtacaatgtcaaatgagcaatggccactgcattgccgtctgattgcaatgaaaaataattaagggtttccacat 155  Q
    |||||| |||||||||||||| |||| ||||||||||| |||  || | ||||||||||  ||||||| ||||||    
T  15218219 agtacagtgtcaaatgagcaagggccgctgcattgccgcctggatgtagtgaaaaataagcaagggttcccacat 15218145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 27453102 - 27453028
Alignment:
Q  81 agtacaatgtcaaatgagcaatggccactgcattgccgtctgattgcaatgaaaaataattaagggtttccacat 155  Q
    ||||||||||||||||||||| |||| ||||||  ||| |||  || | ||||||||||  ||||||||||||||    
T  27453102 agtacaatgtcaaatgagcaagggccgctgcatcaccgcctggatgtagtgaaaaataagcaagggtttccacat 27453028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 45329591 - 45329517
Alignment:
Q  81 agtacaatgtcaaatgagcaatggccactgcattgccgtctgattgcaatgaaaaataattaagggtttccacat 155  Q
    |||||| |||||||||| ||| ||||||||||| ||||||||  || | ||||||||||  ||||||| ||||||    
T  45329591 agtacagtgtcaaatgaacaagggccactgcatcgccgtctggatgtagtgaaaaataagcaagggttcccacat 45329517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University