View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18526_high_9 (Length: 362)

Name: NF18526_high_9
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18526_high_9
NF18526_high_9
[»] chr2 (5 HSPs)
chr2 (18-191)||(39274981-39275154)
chr2 (275-351)||(39274821-39274897)
chr2 (277-350)||(20935276-20935349)
chr2 (277-348)||(20953816-20953887)
chr2 (18-75)||(20954196-20954253)
[»] chr1 (4 HSPs)
chr1 (286-341)||(3217732-3217787)
chr1 (277-350)||(3362562-3362635)
chr1 (277-350)||(3373550-3373623)
chr1 (277-350)||(3379573-3379646)
[»] chr4 (1 HSPs)
chr4 (277-350)||(21238325-21238398)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 39275154 - 39274981
Alignment:
Q  18 aaagattgtatgcataagagagacatataacctattaaaactccaaagctaacattgtatatagactggtaaaagacgaaatatgggggtacaagagtct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39275154 aaagattgtatgcataagagagacatataacctattaaaactccaaagctaacattgtatatagactggtaaaagacgaaatatgggggtacaagagtct 39275055  T
Q  118 cttatttgcatgactcttgcactaatcatgtaataaacttcttaattccaagactaaacactagacaaatgctt 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39275054 cttatttgcatgactcttgcactaatcatgtaataaacttcttaattccaagactaaacactagacaaatgctt 39274981  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 39274897 - 39274821
Alignment:
Q  275 gcactcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttcat 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39274897 gcactcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttcat 39274821  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 277 - 350
Target Start/End: Complemental strand, 20935349 - 20935276
Alignment:
Q  277 actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttca 350  Q
    |||||||| |||||||||| || | ||||||||||||||||| |||||||||||||||||| ||| ||||||||    
T  20935349 actcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttccttca 20935276  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 348
Target Start/End: Complemental strand, 20953887 - 20953816
Alignment:
Q  277 actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttcctt 348  Q
    |||||||| |||||||||| || | ||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  20953887 actcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttcctt 20953816  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 20954253 - 20954196
Alignment:
Q  18 aaagattgtatgcataagagagacatataacctattaaaactccaaagctaacattgt 75  Q
    |||||| ||||||||||||| |||||| | | ||||||||||| |||| |||||||||    
T  20954253 aaagatagtatgcataagagggacatagagcatattaaaactctaaaggtaacattgt 20954196  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 286 - 341
Target Start/End: Original strand, 3217732 - 3217787
Alignment:
Q  286 tatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaa 341  Q
    |||||| |||||| | ||||||||||||||||||||||||||||||||||||||||    
T  3217732 tatttccaatcttcgaagattaggtgagcttctaagcaagcaaagagcagccaaaa 3217787  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 277 - 350
Target Start/End: Complemental strand, 3362635 - 3362562
Alignment:
Q  277 actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttca 350  Q
    ||||||||||||||| ||| || | ||||||||||||||| | |||||||||||||||||||||| || |||||    
T  3362635 actcacaattatttccaattttcgaagattaggtgagcttttgagcaagcaaagagcagccaaaattttcttca 3362562  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 277 - 350
Target Start/End: Complemental strand, 3373623 - 3373550
Alignment:
Q  277 actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttca 350  Q
    |||||||| |||||||||| |||  ||||||||||||||||| |||||||||||||||||  ||| ||||||||    
T  3373623 actcacaaatatttctaattttttaagattaggtgagcttctgagcaagcaaagagcagctgaaatttccttca 3373550  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 350
Target Start/End: Complemental strand, 3379646 - 3379573
Alignment:
Q  277 actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttca 350  Q
    |||||||| |||||| ||| |||  || ||||| |||||||| ||||||||||| |||||| ||| ||||||||    
T  3379646 actcacaaatatttccaattttttaaggttaggggagcttctgagcaagcaaagggcagccgaaatttccttca 3379573  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 350
Target Start/End: Complemental strand, 21238398 - 21238325
Alignment:
Q  277 actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttca 350  Q
    |||||||  ||||| |||| || | ||||||||||||||||| |||||||| ||||||||| | | ||||||||    
T  21238398 actcacagatatttttaattttcgcagattaggtgagcttctgagcaagcagagagcagccgagatttccttca 21238325  T

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