View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18526_low_12 (Length: 334)
Name: NF18526_low_12
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 6085476 - 6085158
Alignment:
| Q |
1 |
caggtaaaatggccaaagaattgacattaacatcgtcatcacggccttttaatcctatcaaaactacgatcttttcaagtggctgtataaaatttctttc |
100 |
Q |
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| T |
6085476 |
caggtaaaatggccaaagaattgacattaacatcgtcatcacggccttttaatcctttcaaaactacgatcttttcaagtggctgtataaaatttctttc |
6085377 |
T |
|
| Q |
101 |
gcttgttttacaaaacttggcttttgcttcatcttcagcaagcatttgatccaatagggacggtcgatttttcaccttgtcttttaagggaacactaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6085376 |
gcttgttttacaaaacttggcttttgcttcatcttcagcaagcatttgatccaatagggacggtcgatttttcaccttgtcttttaagggaacactaaca |
6085277 |
T |
|
| Q |
201 |
ctagttgtgtttgtaattataggacgacgatgagcggcaataatgttgtcgaaaattgacacatctgttgttgcagcaattgccttcaactgcttctcaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6085276 |
ctagttgtgtttgtaattataggacgacgatgagcggcaataatgttgttgaaaattgacacatctgttgttgcagcaattgccttcaactgcttctcaa |
6085177 |
T |
|
| Q |
301 |
ggttaaggatggtttcttg |
319 |
Q |
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||||||||||||||||||| |
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| T |
6085176 |
ggttaaggatggtttcttg |
6085158 |
T |
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