View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18526_low_15 (Length: 282)
Name: NF18526_low_15
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 39075510 - 39075758
Alignment:
| Q |
20 |
acattcttgtcctacaatctatgggtaacacgaaagcagacctttcttctggtttaagattttgtttacttataattaaacgccaaacgtgacttaaaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39075510 |
acattcttgtcctacaatctatgggtaacacgaaagcagacctttcttctggtttaagattttgtttacttataattaaacgccaaacgtgacttaaaag |
39075609 |
T |
|
| Q |
120 |
cgcttgcagtgaagatattattattttctcnnnnnnnnnnnnnnnnnnnnggatttctgcattagcttttgatttgagttgcagaatttgttccttacta |
219 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39075610 |
cgcttgcaatgaagatattattattttctcactactattactactact---gatttctgcattagcttttgatttgagttgcagaatttgttccttacta |
39075706 |
T |
|
| Q |
220 |
aagtggaagattcgatgagacgaaacttcacattgttgattttgtgcttcat |
271 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39075707 |
aagtggaagattcgatgagacaaaacttcacattgttgattttgtgcttcat |
39075758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 7398759 - 7398876
Alignment:
| Q |
20 |
acattcttgtcctacaatctatgggtaacacgaaagcagacctttcttctggtttaagattttgtttacttataattaaacgccaaacgtgacttaaaag |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| || ||||||||||||| ||| |||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
7398759 |
acattcttgttctacaatctatgggtaacacgaatgccgacctttcttctgaattacgattttgtttacttataaataaacgccaaaggtgacttaaaag |
7398858 |
T |
|
| Q |
120 |
cgcttgcagtgaagatat |
137 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
7398859 |
cgcttgcaatgaagatat |
7398876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 7398917 - 7399011
Alignment:
| Q |
172 |
atttctgcattagcttttgatttgagttgcagaatttgttccttactaaagtggaagattcgatgagacgaaacttcacattgttgattttgtgc |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
7398917 |
atttctgcattagcttttgatttgagttgcagaatttgttctttagtaaagtggaagattcgattagacgaaacatcacattgttgattttgtgc |
7399011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 34174410 - 34174625
Alignment:
| Q |
20 |
acattcttgtcctacaatctatgggtaacacgaaagcagacctttcttctggtttaagattttgtttacttataattaaacgccaaacgtgacttaaaag |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| | |||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||| |
|
|
| T |
34174410 |
acattcttgtcctacaatctattggtaacctgaaaatggtattttcttctggtttaagattttgtttacttatagttaaacgccaaaagtggcttaaaag |
34174509 |
T |
|
| Q |
120 |
cgcttgcagtgaagatattattattttctcnnnnnnnnnnnnnnnnnnnnggatttctgcattagcttttgatttgagttgcagaatttgttccttacta |
219 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34174510 |
tgcttgcaatgaagatattattattttatcaccaccgcaactactacta---atttctgcattagcttttgatttgagttgcagaatttgttcctttgtg |
34174606 |
T |
|
| Q |
220 |
aagtggaagattcgatgag |
238 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
34174607 |
aagtggaagattcgatgag |
34174625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University