View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18526_low_17 (Length: 272)
Name: NF18526_low_17
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 24787103 - 24786991
Alignment:
| Q |
146 |
attactgctacttcataactactgtatttcatgttgtctttttataatgttcatttaaattttatgtagtgtcaactataggtaatccttacaaaaataa |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24787103 |
attactgctacttcataactactgtatttcatgttgtctttttataatgttcatttaaattttatgtagtgtcaagtataggtaatccttacaaaaataa |
24787004 |
T |
|
| Q |
246 |
attaaaaacctta |
258 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24787003 |
gttaaaaacctta |
24786991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 43228458 - 43228559
Alignment:
| Q |
147 |
ttactgctacttcataactactgtatttcatgtt-gtctttttataatgttcatttaaattttatgtagtgtc--aactataggtaatccttacaaaaat |
243 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| |||||||| |||||| || ||||| ||||||||||||||||||| |
|
|
| T |
43228458 |
ttactgctactgcataactactgtatgtcatgtttgtctttttataatgttcatataaattttgtgtagtctcaaaactacaggtaatccttacaaaaat |
43228557 |
T |
|
| Q |
244 |
aa |
245 |
Q |
| |
|
|| |
|
|
| T |
43228558 |
aa |
43228559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 43228344 - 43228392
Alignment:
| Q |
33 |
ttgctttctcagaataggttgttgtagtttggctctttagtgtagttga |
81 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43228344 |
ttgcttttttagaataggttgttgtagtttggctctttagtgtagttga |
43228392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 1614870 - 1614758
Alignment:
| Q |
146 |
attactgctacttcataactactgtatttcatgttgtctttttataatgttcatttaaattttatgtagtgtcaactataggtaatccttacaaaaataa |
245 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1614870 |
attactgctacttcataactattgtatttcatgttgtctttttataatgttcatttaaattttatgtggtgtcaactataggtaatccttacaaaaataa |
1614771 |
T |
|
| Q |
246 |
attaaaaacctta |
258 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1614770 |
attaaaaacctta |
1614758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 24456222 - 24456334
Alignment:
| Q |
146 |
attactgctacttcataactactgtatttcatgttgtctttttataatgttcatttaaattttatgtagtgtcaactataggtaatccttacaaaaataa |
245 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24456222 |
attactgctactgcataactactgtatttcatgttgtctttttataatgttcatttaaattttatgtagtgtcaactataggtaatccttacaaaaataa |
24456321 |
T |
|
| Q |
246 |
attaaaaacctta |
258 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
24456322 |
gttaacaacctta |
24456334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 1614983 - 1614935
Alignment:
| Q |
33 |
ttgctttctcagaataggttgttgtagtttggctctttagtgtagttga |
81 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1614983 |
ttgctttttcagaataggttgttgtagtttggctctttagtgtagttga |
1614935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 24456120 - 24456157
Alignment:
| Q |
44 |
gaataggttgttgtagtttggctctttagtgtagttga |
81 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24456120 |
gaataggttgttgtagtttggctctatagtgtagttga |
24456157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 25433828 - 25433915
Alignment:
| Q |
160 |
ataactactgtatttcatgttgtctttttataatgttcatttaaattttatgtagtgtc--aactataggtaatccttacaaaaataa |
245 |
Q |
| |
|
||||||| | ||||| ||||||||| |||||||||||||||| || | |||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
25433828 |
ataactattatattttatgttgtctatttataatgttcatttgaaatgtatgtagtttcaaaactataggtaatccttacaaaaataa |
25433915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 37359319 - 37359258
Alignment:
| Q |
159 |
cataactactgtatttcatgttgtctttttataatgttcatttaaattttatgtagtgtcaa |
220 |
Q |
| |
|
||||||||||||||||| | | |||| |||||||||||||| | ||| ||||||||| |||| |
|
|
| T |
37359319 |
cataactactgtatttcctttagtctctttataatgttcatattaatgttatgtagtctcaa |
37359258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University