View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18526_low_23 (Length: 241)

Name: NF18526_low_23
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18526_low_23
NF18526_low_23
[»] chr4 (15 HSPs)
chr4 (135-233)||(5348895-5348993)
chr4 (1-81)||(31928150-31928229)
chr4 (172-224)||(5352087-5352139)
chr4 (172-226)||(5410199-5410253)
chr4 (172-226)||(5399083-5399137)
chr4 (103-137)||(55549961-55549995)
chr4 (1-35)||(55550069-55550103)
chr4 (104-136)||(795699-795731)
chr4 (172-232)||(5390753-5390813)
chr4 (172-226)||(5376433-5376487)
chr4 (107-137)||(13236138-13236168)
chr4 (1-35)||(49716579-49716613)
chr4 (107-136)||(14288639-14288668)
chr4 (103-136)||(37519373-37519406)
chr4 (103-136)||(37523589-37523622)
[»] chr8 (21 HSPs)
chr8 (1-136)||(4971190-4971324)
chr8 (1-136)||(33854788-33854922)
chr8 (1-137)||(14105028-14105163)
chr8 (102-137)||(23102939-23102974)
chr8 (1-35)||(14787250-14787284)
chr8 (103-137)||(14787365-14787399)
chr8 (1-35)||(14787473-14787507)
chr8 (103-137)||(14787588-14787622)
chr8 (1-35)||(14787696-14787730)
chr8 (103-137)||(14787811-14787845)
chr8 (1-35)||(14787919-14787953)
chr8 (103-137)||(14788034-14788068)
chr8 (1-35)||(14788142-14788176)
chr8 (103-137)||(14788257-14788291)
chr8 (103-137)||(14788480-14788514)
chr8 (1-35)||(14788588-14788622)
chr8 (1-34)||(14788365-14788398)
chr8 (103-136)||(14788701-14788734)
chr8 (103-137)||(18665996-18666030)
chr8 (103-136)||(25200563-25200596)
chr8 (103-135)||(30334055-30334087)
[»] chr2 (14 HSPs)
chr2 (1-136)||(3564632-3564766)
chr2 (54-136)||(40483710-40483792)
chr2 (103-138)||(24255451-24255486)
chr2 (103-137)||(2870628-2870662)
chr2 (1-35)||(2870743-2870777)
chr2 (103-137)||(3650549-3650583)
chr2 (1-35)||(24255560-24255594)
chr2 (103-137)||(26912899-26912933)
chr2 (1-35)||(26913007-26913041)
chr2 (1-38)||(21418724-21418761)
chr2 (104-136)||(24270556-24270588)
chr2 (1-35)||(3650441-3650475)
chr2 (103-136)||(21418833-21418866)
chr2 (104-136)||(11042442-11042474)
[»] chr1 (14 HSPs)
chr1 (1-137)||(16048333-16048468)
chr1 (43-129)||(14865493-14865579)
chr1 (43-136)||(14862354-14862447)
chr1 (103-139)||(52508132-52508168)
chr1 (104-138)||(28969511-28969545)
chr1 (1-35)||(52508024-52508058)
chr1 (103-136)||(6300525-6300558)
chr1 (54-136)||(25066553-25066635)
chr1 (104-136)||(7102780-7102812)
chr1 (103-137)||(2349493-2349527)
chr1 (1-35)||(16650168-16650202)
chr1 (103-137)||(24493726-24493760)
chr1 (103-137)||(37384073-37384107)
chr1 (103-137)||(48770623-48770657)
[»] scaffold0276 (1 HSPs)
scaffold0276 (1-137)||(79-214)
[»] chr3 (9 HSPs)
chr3 (1-137)||(41756769-41756904)
chr3 (102-137)||(15321309-15321344)
chr3 (1-35)||(15321424-15321458)
chr3 (1-35)||(27276255-27276289)
chr3 (1-35)||(37797345-37797379)
chr3 (104-137)||(682684-682717)
chr3 (103-136)||(27276370-27276403)
chr3 (90-137)||(37797237-37797284)
chr3 (103-139)||(10118558-10118594)
[»] scaffold0356 (1 HSPs)
scaffold0356 (1-137)||(2461-2596)
[»] chr6 (9 HSPs)
chr6 (58-135)||(18864441-18864518)
chr6 (54-137)||(10198947-10199030)
chr6 (1-35)||(4212836-4212870)
chr6 (1-35)||(12577500-12577534)
chr6 (104-137)||(12576869-12576902)
chr6 (103-136)||(23149332-23149365)
chr6 (104-136)||(15339385-15339417)
chr6 (103-135)||(24202643-24202675)
chr6 (108-136)||(24200920-24200948)
[»] chr5 (15 HSPs)
chr5 (55-135)||(6095158-6095238)
chr5 (103-139)||(24622699-24622735)
chr5 (103-138)||(3868221-3868256)
chr5 (1-35)||(3700785-3700819)
chr5 (1-35)||(3868331-3868365)
chr5 (1-35)||(10031889-10031923)
chr5 (1-35)||(24622809-24622843)
chr5 (103-136)||(3700894-3700927)
chr5 (103-136)||(10031997-10032030)
chr5 (103-139)||(30322432-30322468)
chr5 (104-135)||(14184606-14184637)
chr5 (54-137)||(4057171-4057254)
chr5 (172-226)||(20326618-20326672)
chr5 (103-137)||(27890340-27890374)
chr5 (103-136)||(8424637-8424670)
[»] scaffold0029 (3 HSPs)
scaffold0029 (54-137)||(133358-133441)
scaffold0029 (1-36)||(102998-103033)
scaffold0029 (103-138)||(102888-102923)
[»] scaffold0002 (1 HSPs)
scaffold0002 (54-137)||(311186-311269)
[»] scaffold0073 (5 HSPs)
scaffold0073 (54-129)||(23250-23325)
scaffold0073 (105-138)||(13425-13458)
scaffold0073 (104-137)||(48463-48496)
scaffold0073 (104-136)||(48718-48750)
scaffold0073 (104-136)||(53249-53281)
[»] scaffold0583 (1 HSPs)
scaffold0583 (54-136)||(5847-5929)
[»] scaffold0770 (2 HSPs)
scaffold0770 (1-35)||(4700-4734)
scaffold0770 (103-138)||(4584-4619)
[»] scaffold0131 (1 HSPs)
scaffold0131 (103-137)||(29153-29187)
[»] scaffold0118 (2 HSPs)
scaffold0118 (103-137)||(19049-19083)
scaffold0118 (1-35)||(19157-19191)
[»] scaffold0012 (1 HSPs)
scaffold0012 (104-138)||(53000-53034)
[»] chr7 (9 HSPs)
chr7 (1-35)||(42239778-42239812)
chr7 (103-137)||(42239886-42239920)
chr7 (1-35)||(46053437-46053471)
chr7 (103-137)||(46053545-46053579)
chr7 (105-138)||(7044592-7044625)
chr7 (103-137)||(12773141-12773175)
chr7 (103-136)||(12730784-12730817)
chr7 (104-136)||(12727309-12727341)
chr7 (104-136)||(42074059-42074091)
[»] scaffold0025 (1 HSPs)
scaffold0025 (105-137)||(22120-22152)
[»] scaffold0316 (1 HSPs)
scaffold0316 (103-136)||(8674-8707)
[»] scaffold0090 (1 HSPs)
scaffold0090 (103-136)||(41176-41209)
[»] scaffold0003 (1 HSPs)
scaffold0003 (103-136)||(192892-192925)
[»] scaffold0281 (1 HSPs)
scaffold0281 (104-136)||(9808-9840)
[»] scaffold0196 (1 HSPs)
scaffold0196 (104-136)||(25528-25560)
[»] scaffold0150 (1 HSPs)
scaffold0150 (104-136)||(8039-8071)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 5348993 - 5348895
Alignment:
Q  135 attcacaaaaagcctcttctttacattttctttataccataattcactatgagagcacacataatcctttggattttctttataccattcagaataatc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5348993 attcacaaaaagcctcttctttacattttctttataccataattcactatgagagtacacataatcctttggattttctttataccattcagaataatc 5348895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 31928150 - 31928229
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaaacttccatttattttattgtgccacatgtcataaccaaaagaagag 81  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||| ||||||||    
T  31928150 tgtgaggatgaatgtggtgagagtatttgtaaaaaacttcca-ttatattattgtgccacatgtcaataccataagaagag 31928229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 5352087 - 5352139
Alignment:
Q  172 cataattcactatgagagcacacataatcctttggattttctttataccattc 224  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||||||||||    
T  5352087 cataattcactatgaaagcacacataatcttttggcttttctttataccattc 5352139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 5410199 - 5410253
Alignment:
Q  172 cataattcactatgagagcacacataatcctttggattttctttataccattcag 226  Q
    |||||||||||||||||||||||||| || ||| | |||||||||||||||||||    
T  5410199 cataattcactatgagagcacacatagtctttttgcttttctttataccattcag 5410253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 5399083 - 5399137
Alignment:
Q  172 cataattcactatgagagcacacataatcctttggattttctttataccattcag 226  Q
    ||||||||||||||||||||||||||| | ||| | ||||||| |||||||||||    
T  5399083 cataattcactatgagagcacacataacctttttgcttttcttgataccattcag 5399137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 55549995 - 55549961
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||||||||||||||||||||||||||||||    
T  55549995 tatgaaataggtcctaaatttatattatatagatt 55549961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 55550103 - 55550069
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  55550103 tgtgaggatgaatgtggtgagagtatttgtaaaaa 55550069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 795699 - 795731
Alignment:
Q  104 atgaaataggtcctaaatttatattatatagat 136  Q
    |||||||||||||||||||||||||||||||||    
T  795699 atgaaataggtcctaaatttatattatatagat 795731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 5390753 - 5390813
Alignment:
Q  172 cataattcactatgagagcacacataatcctttggattttctttataccattcagaataat 232  Q
    |||| |||||||||| |||||| |||||| ||||| ||||||| ||||||||||| |||||    
T  5390753 catacttcactatgatagcacatataatcttttggcttttcttaataccattcagcataat 5390813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 5376433 - 5376487
Alignment:
Q  172 cataattcactatgagagcacacataatcctttggattttctttataccattcag 226  Q
    |||||||||||||||||||||| |||||  ||||| |||||||||| | ||||||    
T  5376433 cataattcactatgagagcacatataattttttggcttttctttatgctattcag 5376487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 137
Target Start/End: Complemental strand, 13236168 - 13236138
Alignment:
Q  107 aaataggtcctaaatttatattatatagatt 137  Q
    |||||||||||||||||||||||||||||||    
T  13236168 aaataggtcctaaatttatattatatagatt 13236138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 49716579 - 49716613
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  49716579 tgtgaggatgaatgtggcgagagtatttgtaaaaa 49716613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 14288668 - 14288639
Alignment:
Q  107 aaataggtcctaaatttatattatatagat 136  Q
    ||||||||||||||||||||||||||||||    
T  14288668 aaataggtcctaaatttatattatatagat 14288639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 37519406 - 37519373
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagat 136  Q
    |||||||| |||||||||||||||||||||||||    
T  37519406 tatgaaatgggtcctaaatttatattatatagat 37519373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 37523622 - 37523589
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagat 136  Q
    |||||||| |||||||||||||||||||||||||    
T  37523622 tatgaaatgggtcctaaatttatattatatagat 37523589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 4971190 - 4971324
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaaacttccatttattttattgtgccacatgtcataaccaaaagaagagnnnnnnncttccataatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||| ||||||||       ||||||||  ||    
T  4971190 tgtgaggatgaatgtggtgagagtatttgtaaaaaacttcca-ttatgttattgtgccacatgtcaataccataagaagagaaaaacacttccatataga 4971288  T
Q  101 aatatgaaataggtcctaaatttatattatatagat 136  Q
     | |||||||||||||||||||||||||||||||||    
T  4971289 gacatgaaataggtcctaaatttatattatatagat 4971324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 33854922 - 33854788
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaaacttccatttattttattgtgccacatgtcataaccaaaagaagagnnnnnnncttccataatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||| ||||||||        ||| |||  |     
T  33854922 tgtgaggatgaatgtggtgagagtatttgtaaaaaacttcca-ttatattattgtgccacatgtcaataccataagaagagaaaaacatttctatatagg 33854824  T
Q  101 aatatgaaataggtcctaaatttatattatatagat 136  Q
     | ||||||||||||| |||||||||||||||||||    
T  33854823 gacatgaaataggtcccaaatttatattatatagat 33854788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 14105163 - 14105028
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaaacttccatttattttattgtgccacatgtcataaccaaaagaagagnnnnnnncttccataatga 100  Q
    ||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||  |||| ||||||||        ||| |||  |     
T  14105163 tgtgaggatgaatgtggtgagagtatttgtaaaaaactttca-ttatgttattgtgccacatgtcaataccataagaagagaaaaacatttctatatagg 14105065  T
Q  101 aatatgaaataggtcctaaatttatattatatagatt 137  Q
     | |||||||| |||||||||||||||||||||||||    
T  14105064 gacatgaaatatgtcctaaatttatattatatagatt 14105028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 23102974 - 23102939
Alignment:
Q  102 atatgaaataggtcctaaatttatattatatagatt 137  Q
    ||||||||||||||||||||||||||||||||||||    
T  23102974 atatgaaataggtcctaaatttatattatatagatt 23102939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14787250 - 14787284
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  14787250 tgtgaggatgaatgtggtgagagtatttgtaaaaa 14787284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 14787365 - 14787399
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||||||||||||||||||||||||||||||    
T  14787365 tatgaaataggtcctaaatttatattatatagatt 14787399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14787473 - 14787507
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  14787473 tgtgaggatgaatgtggtgagagtatttgtaaaaa 14787507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 14787588 - 14787622
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||||||||||||||||||||||||||||||    
T  14787588 tatgaaataggtcctaaatttatattatatagatt 14787622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14787696 - 14787730
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  14787696 tgtgaggatgaatgtggtgagagtatttgtaaaaa 14787730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 14787811 - 14787845
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||||||||||||||||||||||||||||||    
T  14787811 tatgaaataggtcctaaatttatattatatagatt 14787845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14787919 - 14787953
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  14787919 tgtgaggatgaatgtggtgagagtatttgtaaaaa 14787953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 14788034 - 14788068
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||||||||||||||||||||||||||||||    
T  14788034 tatgaaataggtcctaaatttatattatatagatt 14788068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14788142 - 14788176
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  14788142 tgtgaggatgaatgtggtgagagtatttgtaaaaa 14788176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 14788257 - 14788291
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||||||||||||||||||||||||||||||    
T  14788257 tatgaaataggtcctaaatttatattatatagatt 14788291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 14788480 - 14788514
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||||||||||||||||||||||||||||||    
T  14788480 tatgaaataggtcctaaatttatattatatagatt 14788514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14788588 - 14788622
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  14788588 tgtgaggatgaatgtggtgagagtatttgtaaaaa 14788622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 14788365 - 14788398
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  14788365 tgtgaggatgaatgtggtgagagtatttgtaaaa 14788398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 14788701 - 14788734
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagat 136  Q
    ||||||||||||||||||||||||||||||||||    
T  14788701 tatgaaataggtcctaaatttatattatatagat 14788734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 18665996 - 18666030
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||| ||||||||||||||||||||||||||    
T  18665996 tatgaaatgggtcctaaatttatattatatagatt 18666030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 25200596 - 25200563
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagat 136  Q
    |||||||||| |||||||||||||||||||||||    
T  25200596 tatgaaatagatcctaaatttatattatatagat 25200563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 30334055 - 30334087
Alignment:
Q  103 tatgaaataggtcctaaatttatattatataga 135  Q
    |||||||| ||||||||||||||||||||||||    
T  30334055 tatgaaatgggtcctaaatttatattatataga 30334087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 3564766 - 3564632
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaaacttccatttattttattgtgccacatgtcataaccaaaagaagagnnnnnnncttccataatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||| ||||||||       ||||||||  |     
T  3564766 tgtgaggatgaatgtggtgagagtatttgtaaaaaacttcca-ttatgttattgtgccacatgtcaataccataagaagagaaaaacacttccatatagg 3564668  T
Q  101 aatatgaaataggtcctaaatttatattatatagat 136  Q
     | ||||||||| |||||||||||||||||||||||    
T  3564667 gacatgaaatagatcctaaatttatattatatagat 3564632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 40483792 - 40483710
Alignment:
Q  54 gtgccacatgtcataaccaaaagaagagnnnnnnncttccataatgaaatatgaaataggtcctaaatttatattatatagat 136  Q
    ||||||||||||||||||||||||||||       |||||||||||  | |||||||||||||||||||||||||||||||||    
T  40483792 gtgccacatgtcataaccaaaagaagagaaaataacttccataatgggacatgaaataggtcctaaatttatattatatagat 40483710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 138
Target Start/End: Complemental strand, 24255486 - 24255451
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagattc 138  Q
    ||||||||||||||||||||||||||||||||||||    
T  24255486 tatgaaataggtcctaaatttatattatatagattc 24255451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 2870662 - 2870628
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||||||||||||||||||||||||||||||    
T  2870662 tatgaaataggtcctaaatttatattatatagatt 2870628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2870777 - 2870743
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2870777 tgtgaggatgaatgtggtgagagtatttgtaaaaa 2870743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 3650549 - 3650583
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||||||||||||||||||||||||||||||    
T  3650549 tatgaaataggtcctaaatttatattatatagatt 3650583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24255594 - 24255560
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  24255594 tgtgaggatgaatgtggtgagagtatttgtaaaaa 24255560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 26912933 - 26912899
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||||||||||||||||||||||||||||||    
T  26912933 tatgaaataggtcctaaatttatattatatagatt 26912899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26913041 - 26913007
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  26913041 tgtgaggatgaatgtggtgagagtatttgtaaaaa 26913007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21418724 - 21418761
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaaact 38  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  21418724 tgtgaggatgaatgtggtgagagtatttgcaaaaaact 21418761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 24270556 - 24270588
Alignment:
Q  104 atgaaataggtcctaaatttatattatatagat 136  Q
    |||||||||||||||||||||||||||||||||    
T  24270556 atgaaataggtcctaaatttatattatatagat 24270588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3650441 - 3650475
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  3650441 tgtgaggatgaatgtggtgagagtatttataaaaa 3650475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 21418833 - 21418866
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagat 136  Q
    ||||||||||||| ||||||||||||||||||||    
T  21418833 tatgaaataggtcataaatttatattatatagat 21418866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 11042442 - 11042474
Alignment:
Q  104 atgaaataggtcctaaatttatattatatagat 136  Q
    |||||||||||| ||||||||||||||||||||    
T  11042442 atgaaataggtcttaaatttatattatatagat 11042474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 16048333 - 16048468
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaaacttccatttattttattgtgccacatgtcataaccaaaagaagagnnnnnnncttccataatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||| ||||||||        ||| |||  |     
T  16048333 tgtgaggatgaatgtggtgagagtatttgtaaaaaacttcca-ttatgttattgtgccacatgtcaataccataagaagagaaaaacatttctatatagg 16048431  T
Q  101 aatatgaaataggtcctaaatttatattatatagatt 137  Q
     | ||||||||||||||||||||||||||||||||||    
T  16048432 gacatgaaataggtcctaaatttatattatatagatt 16048468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 14865493 - 14865579
Alignment:
Q  43 tttattttattgtgccacatgtcataaccaaaagaagagnnnnnnncttccataatgaaatatgaaataggtcctaaatttatatta 129  Q
    |||| ||||| ||||||||||||||||||||||||||||        ||| ||||||  | ||||||||||||||||||||||||||    
T  14865493 tttagtttatggtgccacatgtcataaccaaaagaagagaaaataatttctataatgggacatgaaataggtcctaaatttatatta 14865579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 14862354 - 14862447
Alignment:
Q  43 tttattttattgtgccacatgtcataaccaaaagaagagnnnnnnncttccataatgaaatatgaaataggtcctaaatttatattatatagat 136  Q
    |||| ||||| |||||||||||||||| |||||||||||        ||| ||||||  | |||||| ||||||||||||||||||||||||||    
T  14862354 tttagtttatggtgccacatgtcataatcaaaagaagagaaaataatttctataatgggacatgaaacaggtcctaaatttatattatatagat 14862447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 52508132 - 52508168
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagattca 139  Q
    |||||||||||||||||||||||||||||||||||||    
T  52508132 tatgaaataggtcctaaatttatattatatagattca 52508168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 28969511 - 28969545
Alignment:
Q  104 atgaaataggtcctaaatttatattatatagattc 138  Q
    |||||||||||||||||||||||||||||||||||    
T  28969511 atgaaataggtcctaaatttatattatatagattc 28969545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 52508024 - 52508058
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  52508024 tgtgaggatgaatgtggtgagagtatttgtaaaaa 52508058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 6300558 - 6300525
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagat 136  Q
    ||||||||||||||||||||||||||||||||||    
T  6300558 tatgaaataggtcctaaatttatattatatagat 6300525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 25066635 - 25066553
Alignment:
Q  54 gtgccacatgtcataaccaaaagaagagnnnnnnncttccataatgaaatatgaaataggtcctaaatttatattatatagat 136  Q
    |||||||||||||  |||||||||||||        |||||||| |  | |||||||||||||||||||||||||||||||||    
T  25066635 gtgccacatgtcaacaccaaaagaagagaaaattatttccataaagggacatgaaataggtcctaaatttatattatatagat 25066553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 7102780 - 7102812
Alignment:
Q  104 atgaaataggtcctaaatttatattatatagat 136  Q
    |||||||||||||||||||||||||||||||||    
T  7102780 atgaaataggtcctaaatttatattatatagat 7102812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 2349493 - 2349527
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||| ||||||||||||||||||||||||||    
T  2349493 tatgaaatgggtcctaaatttatattatatagatt 2349527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 16650202 - 16650168
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  16650202 tgtgaggatgaatgtggcgagagtatttgtaaaaa 16650168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 24493760 - 24493726
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||| ||||||||||||||||||||||||||    
T  24493760 tatgaaatgggtcctaaatttatattatatagatt 24493726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 37384107 - 37384073
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||| ||||||||||||||||||||||||||    
T  37384107 tatgaaatgggtcctaaatttatattatatagatt 37384073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 48770657 - 48770623
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||| ||||||||||||||||||||||||||    
T  48770657 tatgaaatgggtcctaaatttatattatatagatt 48770623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 79 - 214
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaaacttccatttattttattgtgccacatgtcataaccaaaagaagagnnnnnnncttccataatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||| ||||||||        ||| |||  |     
T  79 tgtgaggatgaatgtggtgagagtatttgtaaaaaacttcca-ttatattattgtgccacatgtcaataccataagaagagaaaaacatttctatatagg 177  T
Q  101 aatatgaaataggtcctaaatttatattatatagatt 137  Q
     | ||||||||||||| ||||||||||||||||||||    
T  178 gacatgaaataggtcccaaatttatattatatagatt 214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 41756904 - 41756769
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaaacttccatttattttattgtgccacatgtcataaccaaaagaagagnnnnnnncttccataatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||| ||||||||        ||| |||  |     
T  41756904 tgtgaggatgaatgtggtgagagtatttgtaaaaaacttcca-ttatattattgtgccacatgtcaataccataagaagagaaaaacatttctatatagg 41756806  T
Q  101 aatatgaaataggtcctaaatttatattatatagatt 137  Q
     | ||||||||||||| ||||||||||||||||||||    
T  41756805 gacatgaaataggtcccaaatttatattatatagatt 41756769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 15321344 - 15321309
Alignment:
Q  102 atatgaaataggtcctaaatttatattatatagatt 137  Q
    ||||||||||||||||||||||||||||||||||||    
T  15321344 atatgaaataggtcctaaatttatattatatagatt 15321309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15321458 - 15321424
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  15321458 tgtgaggatgaatgtggtgagagtatttgtaaaaa 15321424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27276255 - 27276289
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  27276255 tgtgaggatgaatgtggtgagagtatttgtaaaaa 27276289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 37797379 - 37797345
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  37797379 tgtgaggatgaatgtggtgagagtatttgtaaaaa 37797345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 682717 - 682684
Alignment:
Q  104 atgaaataggtcctaaatttatattatatagatt 137  Q
    ||||||||||||||||||||||||||||||||||    
T  682717 atgaaataggtcctaaatttatattatatagatt 682684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 27276370 - 27276403
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagat 136  Q
    ||||||||||||||||||||||||||||||||||    
T  27276370 tatgaaataggtcctaaatttatattatatagat 27276403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 37797284 - 37797237
Alignment:
Q  90 ttccataatgaaatatgaaataggtcctaaatttatattatatagatt 137  Q
    ||||||||  || |||||||||| ||||||||||||||||||||||||    
T  37797284 ttccataaaaaactatgaaatagatcctaaatttatattatatagatt 37797237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 10118558 - 10118594
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagattca 139  Q
    |||||||| | ||||||||||||||||||||||||||    
T  10118558 tatgaaatggatcctaaatttatattatatagattca 10118594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 2596 - 2461
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaaacttccatttattttattgtgccacatgtcataaccaaaagaagagnnnnnnncttccataatga 100  Q
    ||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||  |||| ||||||||        ||| |||  |     
T  2596 tgtgaggatgaatgtggtgagagtatttgtaaaaaactttca-ttatgttattgtgccacatgtcaataccataagaagagaaaaacatttctatatagg 2498  T
Q  101 aatatgaaataggtcctaaatttatattatatagatt 137  Q
     | |||||||| |||||||||||||||||||||||||    
T  2497 gacatgaaatatgtcctaaatttatattatatagatt 2461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 18864441 - 18864518
Alignment:
Q  58 cacatgtcataaccaaaagaagagnnnnnnncttccataatgaaatatgaaataggtcctaaatttatattatataga 135  Q
    ||||||||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||||||    
T  18864441 cacatgtcataaccaaaagaagagaaaataacttccataatggaatatgaaataggtcctaaatttatattatataga 18864518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 10198947 - 10199030
Alignment:
Q  54 gtgccacatgtcataaccaaaagaagagnnnnnnncttccataatgaaatatgaaataggtcctaaatttatattatatagatt 137  Q
    ||||||||||||||||||||||||||||       |||||||||||  | ||||||||||||||||||||||||||||||||||    
T  10198947 gtgccacatgtcataaccaaaagaagagaaaataacttccataatgggacatgaaataggtcctaaatttatattatatagatt 10199030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 4212870 - 4212836
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  4212870 tgtgaggatgaatgtggtgagagtatttgtaaaaa 4212836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12577534 - 12577500
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  12577534 tgtgaggatgaatgtggtgagagtatttgtaaaaa 12577500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 12576869 - 12576902
Alignment:
Q  104 atgaaataggtcctaaatttatattatatagatt 137  Q
    ||||||||||||||||||||||||||||||||||    
T  12576869 atgaaataggtcctaaatttatattatatagatt 12576902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 23149365 - 23149332
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagat 136  Q
    ||||||||||||||||||||||||||||||||||    
T  23149365 tatgaaataggtcctaaatttatattatatagat 23149332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 15339385 - 15339417
Alignment:
Q  104 atgaaataggtcctaaatttatattatatagat 136  Q
    |||||||||||||||||||||||||||||||||    
T  15339385 atgaaataggtcctaaatttatattatatagat 15339417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 24202643 - 24202675
Alignment:
Q  103 tatgaaataggtcctaaatttatattatataga 135  Q
    |||||||||||||||||||||||||||||||||    
T  24202643 tatgaaataggtcctaaatttatattatataga 24202675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 24200920 - 24200948
Alignment:
Q  108 aataggtcctaaatttatattatatagat 136  Q
    |||||||||||||||||||||||||||||    
T  24200920 aataggtcctaaatttatattatatagat 24200948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 6095158 - 6095238
Alignment:
Q  55 tgccacatgtcataaccaaaagaagagnnnnnnncttccataatgaaatatgaaataggtcctaaatttatattatataga 135  Q
    |||||||||||||||||||||||||||       |||||||||||  |||||||||| |||||||||||||||||||||||    
T  6095158 tgccacatgtcataaccaaaagaagagaaaataacttccataatgggatatgaaataagtcctaaatttatattatataga 6095238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 24622735 - 24622699
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagattca 139  Q
    |||||||||||||||||||||||||||||||||||||    
T  24622735 tatgaaataggtcctaaatttatattatatagattca 24622699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 138
Target Start/End: Complemental strand, 3868256 - 3868221
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagattc 138  Q
    ||||||||||||||||||||||||||||||||||||    
T  3868256 tatgaaataggtcctaaatttatattatatagattc 3868221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3700785 - 3700819
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  3700785 tgtgaggatgaatgtggtgagagtatttgtaaaaa 3700819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3868365 - 3868331
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  3868365 tgtgaggatgaatgtggtgagagtatttgtaaaaa 3868331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10031889 - 10031923
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  10031889 tgtgaggatgaatgtggtgagagtatttgtaaaaa 10031923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24622843 - 24622809
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  24622843 tgtgaggatgaatgtggtgagagtatttgtaaaaa 24622809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 3700894 - 3700927
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagat 136  Q
    ||||||||||||||||||||||||||||||||||    
T  3700894 tatgaaataggtcctaaatttatattatatagat 3700927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 10031997 - 10032030
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagat 136  Q
    ||||||||||||||||||||||||||||||||||    
T  10031997 tatgaaataggtcctaaatttatattatatagat 10032030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 30322432 - 30322468
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagattca 139  Q
    ||||||||| |||||||||||||||||||||||||||    
T  30322432 tatgaaatatgtcctaaatttatattatatagattca 30322468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 135
Target Start/End: Complemental strand, 14184637 - 14184606
Alignment:
Q  104 atgaaataggtcctaaatttatattatataga 135  Q
    ||||||||||||||||||||||||||||||||    
T  14184637 atgaaataggtcctaaatttatattatataga 14184606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 4057171 - 4057254
Alignment:
Q  54 gtgccacatgtcataaccaaaagaagagnnnnnnncttccataatgaaatatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||||||||  |||||||||||||        |||||||| |  | ||||||||| ||||||||||||||||||||||||    
T  4057171 gtgccacatgtcaacaccaaaagaagagaaaattatttccataaagggacatgaaatagatcctaaatttatattatatagatt 4057254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 20326618 - 20326672
Alignment:
Q  172 cataattcactatgagagcacacataatcctttggattttctttataccattcag 226  Q
    |||||||||||||||||||||| |||||  ||||| |||||||||| | ||||||    
T  20326618 cataattcactatgagagcacatataattttttggcttttctttatgctattcag 20326672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 27890340 - 27890374
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||| ||||||||||||||||||||||||||    
T  27890340 tatgaaatgggtcctaaatttatattatatagatt 27890374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 8424670 - 8424637
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagat 136  Q
    |||||||| |||||||||||||||||||||||||    
T  8424670 tatgaaatgggtcctaaatttatattatatagat 8424637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 133441 - 133358
Alignment:
Q  54 gtgccacatgtcataaccaaaagaagagnnnnnnncttccataatgaaatatgaaataggtcctaaatttatattatatagatt 137  Q
    ||||||||||||||||||||||||||||       |||||||||||  | |||||||||||| |||||||||||||||||||||    
T  133441 gtgccacatgtcataaccaaaagaagagaaaataacttccataatgggacatgaaataggtcataaatttatattatatagatt 133358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 103033 - 102998
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaaa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  103033 tgtgaggatgaatgtggtgagagtatttgtaaaaaa 102998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 138
Target Start/End: Complemental strand, 102923 - 102888
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagattc 138  Q
    ||||||||||||| ||||||||||||||||||||||    
T  102923 tatgaaataggtcataaatttatattatatagattc 102888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 311269 - 311186
Alignment:
Q  54 gtgccacatgtcataaccaaaagaagagnnnnnnncttccataatgaaatatgaaataggtcctaaatttatattatatagatt 137  Q
    ||||||||||||||||||||||||||||       |||||||||||  | |||||||||||| |||||||||||||||||||||    
T  311269 gtgccacatgtcataaccaaaagaagagaaaataacttccataatgggacatgaaataggtcataaatttatattatatagatt 311186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 23250 - 23325
Alignment:
Q  54 gtgccacatgtcataaccaaaagaagagnnnnnnncttccataatgaaatatgaaataggtcctaaatttatatta 129  Q
    ||||||||||||||||||||||||||||       |||||||||||| | |||||||| |||||||||||||||||    
T  23250 gtgccacatgtcataaccaaaagaagagaaaataacttccataatgagacatgaaataagtcctaaatttatatta 23325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 13425 - 13458
Alignment:
Q  105 tgaaataggtcctaaatttatattatatagattc 138  Q
    ||||||||||||||||||||||||||||||||||    
T  13425 tgaaataggtcctaaatttatattatatagattc 13458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 48463 - 48496
Alignment:
Q  104 atgaaataggtcctaaatttatattatatagatt 137  Q
    ||||||||| ||||||||||||||||||||||||    
T  48463 atgaaatagttcctaaatttatattatatagatt 48496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 48718 - 48750
Alignment:
Q  104 atgaaataggtcctaaatttatattatatagat 136  Q
    ||||||||| |||||||||||||||||||||||    
T  48718 atgaaatagttcctaaatttatattatatagat 48750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 53249 - 53281
Alignment:
Q  104 atgaaataggtcctaaatttatattatatagat 136  Q
    ||||||||| |||||||||||||||||||||||    
T  53249 atgaaatagttcctaaatttatattatatagat 53281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 5929 - 5847
Alignment:
Q  54 gtgccacatgtcataaccaaaagaagagnnnnnnncttccataatgaaatatgaaataggtcctaaatttatattatatagat 136  Q
    |||||||||||||  |||||||||||||        |||||||| | || |||||||||||||||||||||||||||||||||    
T  5929 gtgccacatgtcaacaccaaaagaagagaaaattatttccataaaggaacatgaaataggtcctaaatttatattatatagat 5847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 4734 - 4700
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  4734 tgtgaggatgaatgtggtgagagtatttgtaaaaa 4700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 138
Target Start/End: Complemental strand, 4619 - 4584
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagattc 138  Q
    ||||||||||||| ||||||||||||||||||||||    
T  4619 tatgaaataggtcataaatttatattatatagattc 4584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 29153 - 29187
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||||||||||||||||||||||||||||||    
T  29153 tatgaaataggtcctaaatttatattatatagatt 29187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 19083 - 19049
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||||||||||||||||||||||||||||||    
T  19083 tatgaaataggtcctaaatttatattatatagatt 19049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19191 - 19157
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  19191 tgtgaggatgaatgtggtgagagtatttgtaaaaa 19157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 53034 - 53000
Alignment:
Q  104 atgaaataggtcctaaatttatattatatagattc 138  Q
    |||||||||||||||||||||||||||||||||||    
T  53034 atgaaataggtcctaaatttatattatatagattc 53000  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42239778 - 42239812
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  42239778 tgtgaggatgaatgtggtgagagtatttgtaaaaa 42239812  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 42239886 - 42239920
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||||||||||||||||||||||||||||||    
T  42239886 tatgaaataggtcctaaatttatattatatagatt 42239920  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 46053437 - 46053471
Alignment:
Q  1 tgtgaggatgaatgtggtgagagtatttgtaaaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  46053437 tgtgaggatgaatgtggtgagagtatttgtaaaaa 46053471  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 46053545 - 46053579
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||||||||||||||||||||||||||||||    
T  46053545 tatgaaataggtcctaaatttatattatatagatt 46053579  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 7044592 - 7044625
Alignment:
Q  105 tgaaataggtcctaaatttatattatatagattc 138  Q
    ||||||||||||||||||||||||||||||||||    
T  7044592 tgaaataggtcctaaatttatattatatagattc 7044625  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 12773175 - 12773141
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||| ||||||||||||||||||||||||||    
T  12773175 tatgaaatgggtcctaaatttatattatatagatt 12773141  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 12730784 - 12730817
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagat 136  Q
    |||||||| |||||||||||||||||||||||||    
T  12730784 tatgaaatgggtcctaaatttatattatatagat 12730817  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 12727309 - 12727341
Alignment:
Q  104 atgaaataggtcctaaatttatattatatagat 136  Q
    ||||||||| |||||||||||||||||||||||    
T  12727309 atgaaatagatcctaaatttatattatatagat 12727341  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 42074091 - 42074059
Alignment:
Q  104 atgaaataggtcctaaatttatattatatagat 136  Q
    ||||||||| |||||||||||||||||||||||    
T  42074091 atgaaatagatcctaaatttatattatatagat 42074059  T

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Target: scaffold0025 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 22120 - 22152
Alignment:
Q  105 tgaaataggtcctaaatttatattatatagatt 137  Q
    |||||||||||||||||||||||||||||||||    
T  22120 tgaaataggtcctaaatttatattatatagatt 22152  T

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Target: scaffold0316 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 8674 - 8707
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagat 136  Q
    |||||||| |||||||||||||||||||||||||    
T  8674 tatgaaatgggtcctaaatttatattatatagat 8707  T

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Target: scaffold0090 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 41209 - 41176
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagat 136  Q
    ||||||||||||| ||||||||||||||||||||    
T  41209 tatgaaataggtcttaaatttatattatatagat 41176  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 192892 - 192925
Alignment:
Q  103 tatgaaataggtcctaaatttatattatatagat 136  Q
    |||||||| |||||||||||||||||||||||||    
T  192892 tatgaaatgggtcctaaatttatattatatagat 192925  T

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Target: scaffold0281 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 9840 - 9808
Alignment:
Q  104 atgaaataggtcctaaatttatattatatagat 136  Q
    |||||||||||| ||||||||||||||||||||    
T  9840 atgaaataggtcttaaatttatattatatagat 9808  T

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Target: scaffold0196 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 25560 - 25528
Alignment:
Q  104 atgaaataggtcctaaatttatattatatagat 136  Q
    |||||||||||||| ||||||||||||||||||    
T  25560 atgaaataggtcctgaatttatattatatagat 25528  T

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Target: scaffold0150 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 8039 - 8071
Alignment:
Q  104 atgaaataggtcctaaatttatattatatagat 136  Q
    |||||||||||| ||||||||||||||||||||    
T  8039 atgaaataggtcttaaatttatattatatagat 8071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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