View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18526_low_24 (Length: 239)
Name: NF18526_low_24
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 30519922 - 30520147
Alignment:
| Q |
1 |
ttgtttaccttgatcttgtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccctcctagat |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30519922 |
ttgtttaccttgatattgtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccctcctagct |
30520021 |
T |
|
| Q |
101 |
aaagccatttgaatcaaagcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgactggaaagataagccaacccaatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30520022 |
aaagccatttgaatcaaagcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgactggaaagataagccaacccaatca |
30520121 |
T |
|
| Q |
201 |
caagctccttctttaatgttcatgtt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
30520122 |
caagctccttctttaatgttcatgtt |
30520147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 35633820 - 35634027
Alignment:
| Q |
18 |
gtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccctcctagataaagccatttgaatcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35633820 |
gtatagggttacataattatatatatgctcttgtataaaactgcttgctgaaatatgggtcaagcataaggaccctcctagctaaagccatttgaatcaa |
35633919 |
T |
|
| Q |
118 |
agcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgactggaaagataagccaacccaatcacaagctccttctttaat |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35633920 |
agcaa-gtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgactggaaagataagccaacccaatcacaagcaccttctttaat |
35634018 |
T |
|
| Q |
218 |
gttcatgtt |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
35634019 |
gttcatgtt |
35634027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 42247350 - 42247557
Alignment:
| Q |
18 |
gtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccctcctagataaagccatttgaatcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42247350 |
gtatagggttacataattatatatatgctcttgtataaaactgcttgctgaaatatgggtcaagcataaggaccctcctagctaaagccatttgaatcaa |
42247449 |
T |
|
| Q |
118 |
agcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgactggaaagataagccaacccaatcacaagctccttctttaat |
217 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
42247450 |
agc-aagtgatgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgaccggaaagataagccaacctaatcacaagcaccttctttaat |
42247548 |
T |
|
| Q |
218 |
gttcatgtt |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
42247549 |
gttcatgtt |
42247557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 48755063 - 48754856
Alignment:
| Q |
18 |
gtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccctcctagataaagccatttgaatcaa |
117 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| | |||||||||||||||| || |||||||||||||||||| |
|
|
| T |
48755063 |
gtatagggtaacataattatatatatgctcttgtataaaactgcttgccgaaatatgggccaagcataaggaccctcccagctaaagccatttgaatcaa |
48754964 |
T |
|
| Q |
118 |
agcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgactggaaagataagccaacccaatcacaagctccttctttaat |
217 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48754963 |
agcaa-gtgttgttatcgtactaaatagaaaatcattatgtctcatgtgtgagtgtgactcgaaagataagccaacccaatcacaagcaccttctttaat |
48754865 |
T |
|
| Q |
218 |
gttcatgtt |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
48754864 |
gttcatgtt |
48754856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 45384840 - 45385045
Alignment:
| Q |
18 |
gtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccctcctagataaagccatttgaatcaa |
117 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| ||||||||||||| ||||||||||| |||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
45384840 |
gtatagggtaacataattatatatatgctcttgtaaaaaactgcttgctgaaatatgggtcaagcataagga-cctcctagctaaagccatttgaatcaa |
45384938 |
T |
|
| Q |
118 |
agcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgactggaaagataagccaacccaatcacaagctccttctttaat |
217 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45384939 |
agc-aagtgttgttatcgtactaaagagaaaatcattatgtctcat-tgtgagtgtgactcgaaagataagccaacccaatcacaagcaccttctttaat |
45385036 |
T |
|
| Q |
218 |
gttcatgtt |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
45385037 |
gttcatgtt |
45385045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University