View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18526_low_25 (Length: 239)
Name: NF18526_low_25
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 21842815 - 21843034
Alignment:
| Q |
3 |
atgttaatttacctttgtaattcatggcacttatttacttattttgcaagaaatttcatgcaaacccccaataagtgtaataatattaagccaagtccac |
102 |
Q |
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| T |
21842815 |
atgttaatttacctatgtaattcatggcacttattaacttattttgcaagaaatttcatgcaaacccctaataagtgtaataatattaagccaagtccac |
21842914 |
T |
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| Q |
103 |
gttagcttccttgtactttcactttattttccaacacattttgttgttaagagaacaagggaatgaaaggtgcaagcaatgagcttaaaagaggtctatc |
202 |
Q |
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| T |
21842915 |
gtaagctttcttgtactttcactttattttccaacacattttgttgttaagagaacaagggaatgaaaggtgcaagcaatgagcttaaaagaggtatatc |
21843014 |
T |
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| Q |
203 |
gatcatgctcttcacccaac |
222 |
Q |
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||||| |||||||||||||| |
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| T |
21843015 |
gatcaagctcttcacccaac |
21843034 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 35725025 - 35724987
Alignment:
| Q |
18 |
tgtaattcatggcacttatttacttattttgcaagaaat |
56 |
Q |
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| T |
35725025 |
tgtaattgatggcacttattaacttattttgcaagaaat |
35724987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 47745575 - 47745514
Alignment:
| Q |
1 |
tgatgttaatttacctttgtaattcatggcacttatttacttattttgcaagaaatttcatg |
62 |
Q |
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||||||||||||| || ||||||||||| | |||||| ||||||||| ||||||| ||||| |
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| T |
47745575 |
tgatgttaatttaactatgtaattcatgacgcttattaacttattttataagaaatctcatg |
47745514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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