View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18526_low_28 (Length: 235)
Name: NF18526_low_28
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_low_28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 62 - 235
Target Start/End: Original strand, 34302718 - 34302893
Alignment:
| Q |
62 |
gaaaatttcacaacaagtacttatggaaaaacacaataagaaaatcaacttgtaattccttatggtaatttttcttgtaaaagaatgcaca--ttttttg |
159 |
Q |
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| T |
34302718 |
gaaaatttcacaacaagtacttatggaaaaacacaataagaaaatcaacttgtaattccttatggtaatttttcttgtaaaagaatgcacattttttttg |
34302817 |
T |
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| Q |
160 |
ccagaatctgtaaaagtggttgtattaaaaaactgaccattttctatataggtaagtgatgatgaagttcaatttc |
235 |
Q |
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| T |
34302818 |
ccagaatctgtaaaagtggttgtattaaaaaactgaccattttctatataggtaagtgatgatgaagttcaatttc |
34302893 |
T |
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