View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18526_low_29 (Length: 235)
Name: NF18526_low_29
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_low_29 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 293687 - 293453
Alignment:
| Q |
1 |
ctagacgaaatgcattgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagcc |
100 |
Q |
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| T |
293687 |
ctagacgaaatgcattgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagcc |
293588 |
T |
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| Q |
101 |
agccaacttagtggtcaccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggatcggaaagaattatgttcccgaccgcacc |
200 |
Q |
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| T |
293587 |
agccaacttagtggtcaccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggatcggaaagaattatgttcccgaccgcacc |
293488 |
T |
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| Q |
201 |
cttttggatcctgactattgccccccagaactcta |
235 |
Q |
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| T |
293487 |
cttttggatcctgactattgccccccagaactcta |
293453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 27492366 - 27492546
Alignment:
| Q |
7 |
gaaatgcattgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaa |
106 |
Q |
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| T |
27492366 |
gaaatgcattgatcatcaagcaaataatgcgccaaatcattacatctcttaagaaaattcacgacactggcatcgttcacagggatgtaaagccttccaa |
27492465 |
T |
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| Q |
107 |
cttagtggtcaccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggatcggaaagaattatgt |
187 |
Q |
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| T |
27492466 |
cttggttgttacaaaaaaagggcagattaaactcattgattttggtgcagcaacagaccttagaattggaaagaattatgt |
27492546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 27495080 - 27495236
Alignment:
| Q |
16 |
tgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagtggt |
115 |
Q |
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| T |
27495080 |
tgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgt |
27495179 |
T |
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| Q |
116 |
caccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggat |
172 |
Q |
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| T |
27495180 |
tacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacagatcttaggat |
27495236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 27501738 - 27501894
Alignment:
| Q |
16 |
tgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagtggt |
115 |
Q |
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| T |
27501738 |
tgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgt |
27501837 |
T |
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| Q |
116 |
caccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggat |
172 |
Q |
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| T |
27501838 |
tacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacagatcttaggat |
27501894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 27516530 - 27516686
Alignment:
| Q |
16 |
tgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagtggt |
115 |
Q |
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| T |
27516530 |
tgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgt |
27516629 |
T |
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| Q |
116 |
caccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggat |
172 |
Q |
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| T |
27516630 |
tacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacagatcttaggat |
27516686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 172
Target Start/End: Original strand, 27507565 - 27507711
Alignment:
| Q |
26 |
gcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagtggtcaccaaacag |
125 |
Q |
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| T |
27507565 |
gcaaataatgcgccagataattacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgttacaaaacta |
27507664 |
T |
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| Q |
126 |
gggcagattaaactcattgattttggtgctgcaacagaccttcggat |
172 |
Q |
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| T |
27507665 |
ggtcggattaaattcgttgattttggtgcagcaacagatcttaggat |
27507711 |
T |
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