View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18526_low_3 (Length: 453)
Name: NF18526_low_3
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 12 - 435
Target Start/End: Complemental strand, 3086186 - 3085763
Alignment:
| Q |
12 |
agagacacaaaattgacaaaatgatccagtgacatcacctctacaatcatagagaccatagacagcatcaattgtgttctctcctatgcttgtgtgatta |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3086186 |
agagacacaaaattgacaaaatgatccagtgacatcacctctacaatcatagagaccatagacagcatcaattgtgttctctcctatgcttgtatgatta |
3086087 |
T |
|
| Q |
112 |
tatcctttacttacaatagcatcagaggaaagaagtgagaggactttattaaggttagatttgtatgtagctgtaagagattgttcggttgagttgtgac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3086086 |
tatcctttacttacaatagcatcagaggaaagaagtgagaggactttattaaggttagatttgtatgtagctgtaagagattgttcggttgagttgtgac |
3085987 |
T |
|
| Q |
212 |
aatcatcacctacataatttggtgattgtgcaattgattttgtgaaaagggtaatgatgctaataaatctaatgatggaaatgattatgagnnnnnnnnn |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||| |
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| T |
3085986 |
aatcatcacctacataatttggtgattgtgcaattgattttgtgaaaagactaatgatgctaataaatctaatgatgaaaatgagtatgagtttttttgc |
3085887 |
T |
|
| Q |
312 |
nnnnnnnnnnnngtgatgaaatgattgtcatagcaatatgttctagctagttgaagtttatattcaagaattgaggttaatcattgaggtgccatttagc |
411 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3085886 |
catttttattttgtgatgaaatgattgtcatagcaatatgttctggctagttgaagtttatattcaagaattgaggttaatcattgaggtgccatttggc |
3085787 |
T |
|
| Q |
412 |
cttcaccgttcaaaatgacttggt |
435 |
Q |
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||||||| |||||||||||||||| |
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| T |
3085786 |
cttcaccattcaaaatgacttggt |
3085763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 13 - 302
Target Start/End: Complemental strand, 3075644 - 3075355
Alignment:
| Q |
13 |
gagacacaaaattgacaaaatgatccagtgacatcacctctacaatcatagagaccatagacagcatcaattgtgttctctcctatgcttgtgtgattat |
112 |
Q |
| |
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|||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| ||| || || ||||| ||||| ||||||| |
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| T |
3075644 |
gagacacaaaattgacaaaatgatcctgttacatcacctctacaatcatacagaccatagacagcatcaactgtattgtcacctatacttgtatgattat |
3075545 |
T |
|
| Q |
113 |
atcctttacttacaatagcatcagaggaaagaagtgagaggactttattaaggttagatttgtatgtagctgtaagagattgttcggttgagttgtgaca |
212 |
Q |
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||||||||||||||||||||||||| || || | ||| ||||||||||||||||| ||||||||||||| |||||| |||| ||| ||||| |||||||| |
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| T |
3075544 |
atcctttacttacaatagcatcagatgagagcaatgaaaggactttattaaggttggatttgtatgtagttgtaagtgatttttcagttgaattgtgaca |
3075445 |
T |
|
| Q |
213 |
atcatcacctacataatttggtgattgtgcaattgattttgtgaaaagggtaatgatgctaataaatctaatgatggaaatgattatgag |
302 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||| |||||||| ||||||||||| |||||| |
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| T |
3075444 |
atcatcacctacataatttggagattgtgcaagtgattttgtgaaaagggtgatgatgctaagaaatctaaggatggaaatgagtatgag |
3075355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 4555526 - 4555746
Alignment:
| Q |
12 |
agagacacaaaattgacaaaatgatccagtgacatcacctctacaatcatagagaccatagacagcatcaattgtgttctctcctatgcttgtgtgatta |
111 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
4555526 |
agagacacaaaattgacaaaatgatcctgtgacatcacctctacagtcatagagtccatagacagcatcaactgtgttgtctcctatgcttgtgtgatta |
4555625 |
T |
|
| Q |
112 |
tatcctttacttacaatagcatcagaggaaagaagtgagaggactttattaaggttagatttgtatgtagctgtaagagattgttcggttgagttgtgac |
211 |
Q |
| |
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|||||||||||||||||| ||||| ||| || ||| |||| |||||||||||| ||||||||||||| |||||| |||||||| |||| | ||||| |
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| T |
4555626 |
tatcctttacttacaataccatcaaaggtgagcgatgaaaggaatttattaaggttggatttgtatgtagttgtaagtgattgttctcttgaatcgtgac |
4555725 |
T |
|
| Q |
212 |
aatcatcacctacataatttg |
232 |
Q |
| |
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||||||||||||||||||||| |
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| T |
4555726 |
aatcatcacctacataatttg |
4555746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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